| Protein: | NST1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1240 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NST1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1240] | [1..1240] |
|
|
9.0E-90 | [136..995] | [843..1656] |
|
|
5.0E-89 | [136..995] | [842..1655] |
|
|
1.0E-88 | [136..995] | [846..1659] |
|
|
2.0E-88 | [136..995] | [57..870] |
|
|
8.0E-88 | [136..995] | [846..1659] |
|
Region A: Residues: [1-135] |
1 11 21 31 41 51
| | | | | |
1 MPPNSKSKRR KNKSKQHNKK NGNSDPEQSI NPTQLVPRME PELYHTESDY PTSRVIKRAP 60
61 NGDVIVEPIN TDDDKKERTA NLTHNKDSMD SASSLAFTLD SHWESLSPEE KKTILRIEKE 120
121 EVFNVIRNYQ DDHSC
|
| Detection Method: |  |
| Confidence: | 9.221849 |
| Match: | 1c1gA_ |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [136-496] |
1 11 21 31 41 51
| | | | | |
1 SCSVCGRRHL AMDQEMERIY NTLYAMDKDK DPETNPIKFH LGIIKELQIS KNQQQNDLSS 60
61 TKGEVVKNFL SSSTVGSLKE EVLHFKQKQL SKQEQAHNET ADNTSLLEEN LNNIHINKTS 120
121 SEISANFNSV SDEELQQKYS NFTKTFISSH PKIAEEYVQK MMMYPNIRAL TDDLMNSNGQ 180
181 GFLNAIEDFV RDGQIQASKK DDSITEDEAS STDLTDPKEF TTMLHSGKPL TEDEYADLQR 240
241 NIAERMTNAY DTASKKFKDV SQLEKELFTR FMSGRDKKSF RELIIQSFKN KFDGELGPSV 300
301 LAATLSSCFS SQSKDTSLDT DSIYEDEDEE DYDDYSEYAE DSEEVSEYEG IEAVEKPEHD 360
361 E
|
| Detection Method: | |
| Confidence: | 54.38764 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [497-776] |
1 11 21 31 41 51
| | | | | |
1 KSNGIRETLH LSYDHDHKRQ NHPHHHYHST STHSEDELSE EEYISDIELP HDPHKHFHRD 60
61 DDILDGDEDE PEEEDENEGD DEEDTYDSGL DETDRLEEGR KLIQIAITKL LQSRIMASYH 120
121 EKQADNNRLK LLQELEEEKR KKREKEEKKQ KKREKEKEKK RLQQLAKEEE KRKREEEKER 180
181 LKKELEEREM RRREAQRKKV EEAKRKKDEE RKRRLEEQQR REEMQEKQRK QKEELKRKRE 240
241 EEKKRIREQK RLEQEKLQKE KEEEERQRLI AEDALRKQKL
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [777-1093] |
1 11 21 31 41 51
| | | | | |
1 NEEQTSANIL SAKPFTENGV GNPVSSQSHP NMTNYQEDNS CSINDEILKM VNSVAASKPV 60
61 SPTGFNVHDL LLPSTNNQMP AMEQSHLPQP GNQNNHFGTT TIPNALDLAT KSSLQTENNY 120
121 LMNSQTLENT SLLMHNNSSP TKLLPNDFGL SSWGGLTNTM SINPTCKPPV IQTSEMESQA 180
181 HKSSPQATMP SFGLPNGGTH RKSFTDELNT LTSMLSSSGF ADTSLSSSGF PPSQRSVWND 240
241 QKSSFSGPST AGNFNNSSIQ SGMLLAPTLG SVESFPNRTS IWDSSTTPMM NKSELSGRNI 300
301 TSTAQDSPAF MASNIWS
|
| Detection Method: | |
| Confidence: | 9.82 |
| Match: | 1ldvA |
| Description: | No description for 1ldvA was found. |
|
Region A: Residues: [1094-1240] |
1 11 21 31 41 51
| | | | | |
1 SNSQYNSPYL TSNVLQSPQI SSGVDESHIL DSIYNTYLAI SPQDSLNPYI AIGTLFQNLV 60
61 GLNLDYSTFI NKLISMQGAY NCEFFTDNNG SITHVRFARQ TPAGHSKGLL NQLFSGLNDP 120
121 TATPFTSRPH TSTRASFPIA SSTTQTS
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.257 | a.1.1 | Globin-like |
| View | Download | 0.354 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.325 | a.74.1 | Cyclin-like |
| View | Download | 0.327 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.354 | d.109.1 | Actin depolymerizing proteins |
| View | Download | 0.327 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.325 | a.74.1 | Cyclin-like |
| View | Download | 0.257 | a.1.1 | Globin-like |
| View | Download | 0.240 | a.74.1 | Cyclin-like |
| View | Download | 0.234 | a.118.15 | Aconitase B, N-terminal domain |
| View | Download | 0.231 | b.55.1 | PH domain-like |
| View | Download | 0.216 | a.79.1 | Antitermination factor NusB |
| View | Download | 0.211 | c.37.1 | P-loop containing nucleoside triphosphate hydrolases |
| View | Download | 0.204 | d.58.26 | GHMP Kinase, C-terminal domain |
| View | Download | 0.200 | a.4.5 | "Winged helix" DNA-binding domain |
