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View Structure Prediction Details

Protein: SSN8
Organism: Saccharomyces cerevisiae
Length: 323 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SSN8.

Description E-value Query
Range		 Subject
Range
CCNB1, CGB1 - chorionic gonadotropin, beta polypeptide 1, cyclin B1
gi|123990181 - gi|123990181|gb|ABM83901.1| cyclin B1 [synthetic construct]
 3.0E-74 [14..323] [144..430]
gi|157423093, gi... - gi|7328938|dbj|BAA92876.1| cyclin B1 [Danio rerio], gi|31323423|gb|AAP47013.1| cyclin-B [Danio rerio...
 1.0E-72 [14..323] [111..397]
gi|254022 - gi|254022|gb|AAB22970.1| cyclin B1 [Mus sp.]
CCNB1_MOUSE - G2/mitotic-specific cyclin-B1 OS=Mus musculus GN=Ccnb1 PE=1 SV=3
 2.0E-72 [14..323] [141..427]
CGB1_CRILO - (Q08301) G2/mitotic-specific cyclin B1
CCNB1_CRIGR - G2/mitotic-specific cyclin-B1 OS=Cricetulus griseus GN=CCNB1 PE=2 SV=1
 4.0E-72 [14..323] [140..426]
CCNB2_CHICK - G2/mitotic-specific cyclin-B2 OS=Gallus gallus GN=CCNB2 PE=2 SV=1
 8.0E-72 [14..323] [111..398]
gi|9082247 - gi|9082247|gb|AAF82779.1| cyclin B [Carassius auratus gibelio]
 1.0E-71 [14..323] [110..396]
gi|197693462 - gi|197693462|gb|ACH71406.1| B2 cyclin [Dicistronic cloning vector pXL-Id]
CCNB2_XENLA - G2/mitotic-specific cyclin-B2 OS=Xenopus laevis GN=ccnb2 PE=1 SV=1
gi|197693458 - gi|197693458|gb|ACH71403.1| B2 cyclin [Dicistronic cloning vector pXLJ Con]
 2.0E-71 [14..323] [105..391]
CCNB1_MESAU - G2/mitotic-specific cyclin-B1 OS=Mesocricetus auratus GN=CCNB1 PE=2 SV=1
 2.0E-71 [14..323] [140..426]
CCNB2_RANJA - G2/mitotic-specific cyclin-B2 OS=Rana japonica GN=CCNB2 PE=2 SV=1
 2.0E-71 [14..323] [103..389]
gi|13605768 - gi|13605768|gb|AAK32876.1| cyclin B2 [Rana dybowskii]
 5.0E-71 [14..323] [105..391]

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Predicted Domain #1
Region A:
Residues: [1-178] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGSFWTSTQ RHHWQYTKAS LAKERQKLWL LECQLFPQGL NIVMDSKQNG IEQSITKNIP  60
   61 ITHRDLHYDK DYNLRIYCYF LIMKLGRRLN IRQYALATAH IYLSRFLIKA SVREINLYML 120
  121 VTTCVYLACK VEECPQYIRT LVSEARTLWP EFIPPDPTKV TEFEFYLLEE LESYLIVH

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [280-323] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVDLEEVMDT IQEQITLYDH WDKYHEQWIK FLLHTLYLRP ASAI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 125.522879
Match: 1jkw__
Description: Cyclin H (mcs2)
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [179-279] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPYQSLKQIV QVLKQPPFQI TLSSDDLQNC WSLINDSYIN DVHLLYPPHI IAVACLFITI  60
   61 SIHGKPTKGS SLASAASEAI RDPKNSSSPV QIAFNRFMAE S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 125.522879
Match: 1jkw__
Description: Cyclin H (mcs2)
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle