| Protein: | FAP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 965 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FAP1.
| Description | E-value | Query Range |
Subject Range |
|
|
386.0 | [0..31] | [723..81] |
|
|
379.0 | [0..27] | [718..73] |
|
|
375.0 | [0..27] | [718..83] |
|
|
296.0 | [0..9] | [692..1710] |
|
Region A: Residues: [1-284] |
1 11 21 31 41 51
| | | | | |
1 MTEHESLGLE QNQDGGDTYR HHNLSDGCIS SVEDANEQPS SYEEESDDDM QYYERAIQEI 60
61 SSGDSYVCMI CTVEMDYTCQ MFACKRCYRV FDYGCIREWA LKSTEKTVDR IWKCPNCYYV 120
121 SKRVPVKNRP TCWCGKVVNP DPNPLDPNSC GQTCNASTCM HGCSKICHLG PHPECTRMVE 180
181 IMCHCGKHSK SIFCYQSKVM KKNFNCQEVC GLPLSCSIHT CKKKCHPGLC GPCPEMIISK 240
241 DSPKKQIKCY CGNHTRANIK CSETKFPKSG KSSKDENGNR WIGV
|
| Detection Method: |  |
| Confidence: | 13.42 |
| Match: | |
| Description: | No description for 1jv2B was found. |
|
Region A: Residues: [285-411] |
1 11 21 31 41 51
| | | | | |
1 FACADNRVVD YSCRKHSFIE SCISPPTING EKACPFLPSS LKTCPCGRTA LEELTKPRKH 60
61 CDDPIPTCDS RCGKPLKCGK HSCPFTCHDK ACMEPCLQID SVKCACEQST FSVPCGFQGR 120
121 PRCNIKC
|
| Detection Method: | |
| Confidence: | 2.09691 |
| Match: | 1kloA |
| Description: | CRYSTAL STRUCTURE OF THREE CONSECUTIVE LAMININ-TYPE EPIDERMAL GROWTH FACTOR-LIKE (LE) MODULES OF LAMININ GAMMA1 CHAIN HARBORING THE NIDOGEN BINDING SITE |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [412-632] |
1 11 21 31 41 51
| | | | | |
1 ESLMSCRRHR CTDRCCSGRP SAIRRKKNLF RTQDLLDESL VEAKHICLKP CNLTLSCGIH 60
61 KCQRKCHPGK CPPCLESDSN DLVCPCGNTV VPAPVRCGTK LPTCNHPCIK VVRGESTCGH 120
121 KPMPHTCHSL DVSCPPCTET VFKPCKCGKK TKVRTVCFQT DVSCGIKCGI PLSYCYHTCQ 180
181 KTCHLPGNCQ KVCKQTCGQK RLNCNHECPK PCHGKTECPD L
|
| Detection Method: | |
| Confidence: | 6.39794 |
| Match: | 1jv2B |
| Description: | Hybrid domain of integrin beta; Integrin beta A domain; Integrin beta tail domain; Integrin beta EGF-like domains |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [633-711] |
1 11 21 31 41 51
| | | | | |
1 PCATLVKIYC KCGRIKKSVT CGAKSDRVSV TESSVLDCNE ECEALKRLKE LKEAFGIKEE 60
61 TNNFTSNELD ALKKLVSVA
|
| Detection Method: | |
| Confidence: | 2.69897 |
| Match: | 1dcxB_ |
| Description: | No description for 1dcxB_ was found. |
|
Region A: Residues: [712-844] |
1 11 21 31 41 51
| | | | | |
1 TTFEELQLPF TEAALSVYSK QERWCSQIEA ILNKLMDDKT RSSLHFKPMR PPQRHFIREL 60
61 AKAYGLYSES QDREPMRSVF IKKEDNGASN KPVLSLAEAY PLYESFKQLQ KERKAQEFQA 120
121 RTTAKLINFE VQD
|
| Detection Method: | |
| Confidence: | 7.77 |
| Match: | |
| Description: | No description for 1mszA was found. |
|
Region A: Residues: [845-965] |
1 11 21 31 41 51
| | | | | |
1 TEPKVEVAKK NGFLVQNLVA GNTAEDLRRF FEPHLKHTLV VNPQYLILDD GKTALVYPEN 60
61 YETASVNTER DMELLVGHFD FMAKEAFLAD SISLCSTEEE LERRLDTPVI QEDSPVMDNN 120
121 T
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
