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View Structure Prediction Details

Protein: YNL018C
Organism: Saccharomyces cerevisiae
Length: 612 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNL018C.

Description E-value Query
Range
Subject
Range
YND4_YEAST - Uncharacterized protein YNL034W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL034W ...
YNL034W - Putative protein of unknown function; YNL034W is not an essential gene
0.0 [1..612] [1..612]

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Predicted Domain #1
Region A:
Residues: [1-612]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSFQEFKA FCNKVGLDFQ WLNLQSSKSV PENGSSEGFS AVSDTVQENI RPATEPLNVN  60
   61 QSKDPVSNFF YDVKNAPLWN VYKRNHSGHS SAEACSGVSS RQAPKNIPEA MVKETVLSNH 120
  121 DNVTIINELL PTSSAMHQEE STAMTTSYLL SHSVNDTCNV MFSSSSHNRA MLPSSLVQRN 180
  181 NATTSPTTDS ASENNESVPS LTSSVSTSSS VYSSWNPPHS PHISSFPDGN FASLNAEVTC 240
  241 FDFRRTKDSR TKETNESIIP TEIYCPTNST DHHKHYPSRK SKQDACAPAP CNQNISCSVV 300
  301 STAEFSQSNH TLTTVVPSYM QQYLDRPQNW FESKMGKYCP LFLRSTKNID YDSLEFKFER 360
  361 KMIAVQYLLL DEQSEPRRYY NPSNKSIPFW KRPFNFDTMP SYDQLMEEAE CRFYSYQYKY 420
  421 EGFQRIEPYS ISCPWKNTQR EIDLVLDHIH FSLDVGEKKS LNRKGNITLD TLDSKVDPNI 480
  481 QIKPYQIFPS NNLVYEGLPH PAEQSLILSP DTSLIERAFQ ALIDICKESI PSSNDCSTRN 540
  541 NNSAPQLTVP EPSKPCRLLL VRESRTATEL KTNKKLWLHS QRRNIEVTVP MHPSERGTKS 600
  601 WLRKWLSTFV HQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [221-395]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PHISSFPDGN FASLNAEVTC FDFRRTKDSR TKETNESIIP TEIYCPTNST DHHKHYPSRK  60
   61 SKQDACAPAP CNQNISCSVV STAEFSQSNH TLTTVVPSYM QQYLDRPQNW FESKMGKYCP 120
  121 LFLRSTKNID YDSLEFKFER KMIAVQYLLL DEQSEPRRYY NPSNKSIPFW KRPFN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [396-612]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDTMPSYDQL MEEAECRFYS YQYKYEGFQR IEPYSISCPW KNTQREIDLV LDHIHFSLDV  60
   61 GEKKSLNRKG NITLDTLDSK VDPNIQIKPY QIFPSNNLVY EGLPHPAEQS LILSPDTSLI 120
  121 ERAFQALIDI CKESIPSSND CSTRNNNSAP QLTVPEPSKP CRLLLVRESR TATELKTNKK 180
  181 LWLHSQRRNI EVTVPMHPSE RGTKSWLRKW LSTFVHQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle