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View Structure Prediction Details

Protein: PBI2
Organism: Saccharomyces cerevisiae
Length: 75 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PBI2.

Description E-value Query
Range
Subject
Range
IPB2_YEAST - Protease B inhibitor 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PBI2 PE=1 SV=1
gi|151944516 - gi|151944516|gb|EDN62794.1| proteinase inhibitor I2B (PBI2) [Saccharomyces cerevisiae YJM789]
PBI2 - Cytosolic inhibitor of vacuolar proteinase B, required for efficient vacuole inheritance; with thior...
gi|190409009 - gi|190409009|gb|EDV12274.1| proteinase inhibitor I2B [Saccharomyces cerevisiae RM11-1a]
4.0E-27 [1..75] [1..75]
gi|447739 - gi|447739|prf||1915304A nylB upstream ORF
1.0E-26 [2..75] [1..74]

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Predicted Domain #1
Region A:
Residues: [1-75]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKNFIVTLK KNTPDVEAKK FLDSVHHAGG SIVHEFDIIK GYTIKVPDVL HLNKLKEKHN  60
   61 DVIENVEEDK EVHTN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.722 d.58.3 Protease propeptides/inhibitors
View Download 0.721 d.58.17 Metal-binding domain
View Download 0.569 d.58.18 Regulatory domain in the aminoacid metabolism
View Download 0.515 d.58.40 D-ribose-5-phosphate isomerase (RpiA), lid domain
View Download 0.508 d.45.1 ClpS-like
View Download 0.501 d.58.8 Viral DNA-binding domain
View Download 0.494 d.74.2 C-terminal domain of arginine repressor
View Download 0.472 d.68.6 DNA-binding protein Sso10b (AlbA)
View Download 0.469 d.37.1 CBS-domain
View Download 0.433 d.52.1 Alpha-lytic protease prodomain
View Download 0.431 d.68.1 Translation initiation factor IF3, C-terminal domain
View Download 0.418 d.58.17 Metal-binding domain
View Download 0.407 d.58.24 CheY-binding domain of CheA
View Download 0.402 d.58.18 Regulatory domain in the aminoacid metabolism
View Download 0.390 a.150.1 Anti-sigma factor AsiA
View Download 0.387 d.58.7 RNA-binding domain, RBD
View Download 0.352 a.42.1 MDM2
View Download 0.344 a.118.11 Cytochrome c oxidase subunit E
View Download 0.334 d.58.36 Sulfite reductase, domains 1 and 3
View Download 0.331 a.58.1 Chemotaxis receptor methyltransferase CheR, N-terminal domain
View Download 0.330 d.58.10 Acylphosphatase-like
View Download 0.327 d.58.1 4Fe-4S ferredoxins
View Download 0.318 d.58.3 Protease propeptides/inhibitors
View Download 0.305 b.36.1 PDZ domain-like
View Download 0.304 c.15.1 BRCT domain
View Download 0.297 d.88.1 SRF-like
View Download 0.285 a.28.3 Retrovirus capsid protein C-terminal domain
View Download 0.269 d.93.1 SH2 domain
View Download 0.266 d.58.7 RNA-binding domain, RBD
View Download 0.261 d.58.4 Dimeric alpha+beta barrel
View Download 0.260 a.4.1 Homeodomain-like
View Download 0.256 d.58.38 Urease metallochaperone UreE, C-terminal domain
View Download 0.245 c.15.1 BRCT domain
View Download 0.242 g.10.1 Hairpin loop containing domain-like
View Download 0.241 d.58.12 eEF-1beta-like
View Download 0.239 d.214.1 Hypothetical protein MTH1880
View Download 0.233 a.4.12 TrpR-like
View Download 0.222 c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.218 d.58.23 Probable ACP-binding domain of malonyl-CoA ACP transacylase
View Download 0.208 a.4.1 Homeodomain-like
View Download 0.205 d.58.44 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View Download 0.205 d.93.1 SH2 domain
View Download 0.204 c.58.1 Aminoacid dehydrogenase-like, N-terminal domain
View Download 0.201 d.76.1 GYF domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle