YRC Public Data Repository - Protein Structure Prediction

Protein:	YNL011C
Organism:	Saccharomyces cerevisiae
Length:	444 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNL011C.

Description	E-value	Query Range	Subject Range
YNL011C - Putative protein of unknown function; YNL011C is not an essential gene gi\|207341605 - gi\|207341605\|gb\|EDZ69612.1\| YNL011Cp-like protein [Saccharomyces cerevisiae AWRI1631] YNB1_YEAST - Uncharacterized protein YNL011C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL011C ... gi\|190409007 - gi\|190409007\|gb\|EDV12272.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	0.0	[1..444]	[1..444]
gi\|16944482 - gi\|16944482\|emb\|CAD11407.1\| conserved hypothetical protein [Neurospora crassa]	7.0E-72	[3..232]	[8..240]
gi\|7429377 - pir\|\|S76100 hypothetical protein - Synechocystis sp. (strain PCC 6803) Y154_SYNY3 - UPF0052 protein sll0154 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=sll0154 PE=3 SV... GNGF_SYNY3 - Putative gluconeogenesis factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0154 PE=3 SV=1	2.0E-70	[2..280]	[148..383]
YZ68_BACHD, Y356... - (Q9K706) Hypothetical UPF0052 protein BH3568, UPF0052 protein BH3568 OS=Bacillus halodurans GN=BH356... GNGF_BACHD - Gluconeogenesis factor OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 915...	1.0E-62	[2..279]	[5..240]
gi\|25303417 - pir\|\|AC2093 hypothetical protein alr2298 [imported] - Nostoc sp. (strain PCC 7120) GNGF_NOSS1 - Putative gluconeogenesis factor OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2298 PE=3 SV=1	3.0E-60	[2..275]	[138..369]
GNGF_THETU - Putative gluconeogenesis factor OS=Thermoanaerobacterium thermosulfurigenes PE=3 SV=1	4.0E-54	[2..275]	[11..245]
Y512_CLOAB - UPF0052 protein CA_C0512 OS=Clostridium acetobutylicum GN=CA_C0512 PE=3 SV=1 GNGF_CLOAB - Putative gluconeogenesis factor OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 ...	4.0E-54	[2..280]	[104..343]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	4.0E-54	[2..275]	[11..245]
GNGF_BACSU - Gluconeogenesis factor OS=Bacillus subtilis (strain 168) GN=mgfK PE=3 SV=1 YVCK_BACSU - UPF0052 protein yvcK OS=Bacillus subtilis GN=yvcK PE=3 SV=1	1.0E-53	[2..275]	[6..237]
GNGF_AQUAE - Putative gluconeogenesis factor OS=Aquifex aeolicus (strain VF5) GN=aq_778 PE=3 SV=1 Y778_AQUAE - UPF0052 protein aq_778 OS=Aquifex aeolicus GN=aq_778 PE=3 SV=1	4.0E-53	[1..273]	[4..240]

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Predicted Domain #1

Region A:
Residues: [1-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVVVCSGGT ATNSLTPCFS NISILKGHEL TYILPISDNG GSTSEILRIV GGPAIGDIRS  60
   61 RIVRLLQDEQ LVELFGHRLP NDKLLAKKEW NEIVEGSHPI WKNISIEVKE MCRSFIIHMQ 120
  121 AELLKKIKHS NPFQFESASI GNFFLTGARL FLGSLDASIE LMMRIGRCSP LVHVIPCINT 180
  181 NHTHHISALL TNGEMITGQS QISHPSKSVP KDNSIAHSAK FIHLLGSYDD HLKILLDDEE 240
  241 EEAEEEYANP IYILPELKNS QLHFDKLDES QNLPAPVHRI LYI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [284-444]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPYGEEIKPM GNPRAISKVK KADMVVYSIG SLMTSLLPIL ILGNLAEVIL ESNNTKKVLL  60
   61 INNKYDREVF GLDGLHYVQM IIDSMSRAIA GYRQSKGVHS ENDDFEWQDF ITDIVYLKNG 120
  121 EIEIDETIFE KHSIRCHQIA SSDKMESEEL EKVLNQIGLK N

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits