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View Structure Prediction Details

Protein: YNL010W
Organism: Saccharomyces cerevisiae
Length: 241 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNL010W.

Description E-value Query
Range		 Subject
Range
gi|3211979 - gi|3211979|gb|AAC24526.1| sarco-/endoplasmic reticulum Ca-ATPase 3 [Homo sapiens]
 8.0E-48 [61..239] [55..228]
AT2A3_MOUSE - Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Mus musculus GN=Atp2a3 PE=1 SV=3
 3.0E-47 [61..239] [588..761]
AT2A3_CHICK - Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Gallus gallus GN=ATP2A3 PE=2 SV=1
 4.0E-47 [65..239] [592..761]
gi|125592626, gi... - gi|50949101|ref|XP_493908.1| rice EST AU030811, similar to rice Ca+2-ATPase (U82966) [Oryza sativa],...
gi|9743458 - gi|9743458|dbj|BAA90510.2| unnamed protein product [Oryza sativa]
 8.0E-47 [27..239] [577..786]
gi|12055495 - gi|12055495|emb|CAC20903.1| Ca2+-ATPase [Rana sylvatica]
 8.0E-47 [18..239] [543..761]
gi|808821, gi|23... - gi|808821|gb|AAA96714.1| ATPase, gi|238657362|emb|CAZ28439.1| ATPase, putative [Schistosoma mansoni]
 9.0E-47 [65..239] [594..763]
ATA3_RAT, AT2A3_RAT - (P18596) Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 (EC 3.6.3.8) (Calcium pump 3) (SERCA3) ...
 1.0E-46 [61..239] [588..761]

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Predicted Domain #1
Region A:
Residues: [1-60] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKAVIFTDF DGTVTLEDSN DYLTDTLGFG KEKRLKVFEG VLDDTKSFRQ GFMEMLESIH  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.0
Match: 1jud__
Description: L-2-Haloacid dehalogenase, HAD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrolase activity 0.877696725573375 bayes_pls_golite062009
catalytic activity 0.786540433906087 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [61-241] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPFPECIKIL EKKIRLDPGF KDTFEWAQEN DVPVIVVSSG MKPIIKVLLT RLVGQESIHK  60
   61 IDIVSNEVEI DAHDQWKIIY KDESPFGHDK SRSIDAYKKK FESTLKAGEQ RPVYFYCGDG 120
  121 VSDLSAAKEC DLLFAKRGKD LVTYCKKQNV PFHEFDTFKD ILASMKQVLA GEKTVAELME 180
  181 N

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.522879
Match: 1eulA_
Description: Calcium ATPase, transduction domain A; Calcium ATPase, catalytic domain P; Calcium ATPase; Calcium ATPase, transmembrane domain M
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle