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View Structure Prediction Details

Protein: YMR315W
Organism: Saccharomyces cerevisiae
Length: 349 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR315W.

Description E-value Query
Range
Subject
Range
YMR315W - Protein with NADP(H) oxidoreductase activity; transcription is regulated by Stb5p in response to NAD...
YM94_YEAST - Uncharacterized protein YMR315W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR315W ...
5.0E-70 [1..349] [1..349]
gi|25328435 - pir||C84130 oxidoreductase BH3843 [imported] - Bacillus halodurans (strain C-125)
gi|15616405, gi|... - gi|15616405|ref|NP_244710.1| oxidoreductase [Bacillus halodurans C-125], gi|10176468|dbj|BAB07562.1|...
9.0E-67 [4..345] [5..334]
gi|4981103, gi|1... - gi|4981103|gb|AAD35670.1|AE001733_7 lipopolysaccharide biosynthesis protein BplA [Thermotoga maritim...
gi|7462872 - pir||B72359 lipopolysaccharide biosynthesis protein BplA - Thermotoga maritima (strain MSB8)
4.0E-66 [3..347] [2..346]
gi|7429797 - pir||D71201 hypothetical protein PH1881 - Pyrococcus horikoshii
gi|3258320, gi|1... - gi|3258320|dbj|BAA31003.1| 371aa long hypothetical protein [Pyrococcus horikoshii OT3], gi|14591627|...
1.0E-65 [3..348] [34..370]
gi|14245984, gi|... - gi|15923207|ref|NP_370741.1| NADH-dependent dehydrogenase [Staphylococcus aureus subsp. aureus Mu50]...
gi|156720682, gi... - gi|156978547|ref|YP_001440806.1| hypothetical protein SAHV_0216 [Staphylococcus aureus subsp. aureus...
1.0E-63 [1..340] [1..353]
gi|25506937 - pir||E89784 hypothetical protein SA0210 [imported] - Staphylococcus aureus (strain N315)
gi|15925921, gi|... - gi|15925921|ref|NP_373454.1| hypothetical protein SA0210 [Staphylococcus aureus subsp. aureus N315],...
gi|90582884, gi|... - gi|90582884|ref|ZP_01238646.1| Oxidoreductase, N-terminal:Oxidoreductase, C-terminal [Staphylococcus...
gi|90584937, gi|... - gi|90584937|ref|ZP_01240649.1| Oxidoreductase, N-terminal:Oxidoreductase, C-terminal [Staphylococcus...
2.0E-63 [1..340] [1..353]
gi|7507776 - gi|7507776|pir||T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans
9.0E-63 [2..349] [9..348]
gi|5459153, gi|1... - gi|5459153|emb|CAB50639.1| NADH dependent dyhydrogenase related protein [Pyrococcus abyssi GE5], gi|...
gi|5459153, gi|7... - pir||A75025 NADH-dependent dyhydrogenase related protein PAB1138 - Pyrococcus abyssi (strain Orsay),...
1.0E-62 [3..348] [4..340]
SPAC26H5.09c - GFO /IDH /MocA family oxidoreductase
YEG9_SCHPO - Uncharacterized oxidoreductase C26H5.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=S...
1.0E-62 [1..339] [1..361]

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Predicted Domain #1
Region A:
Residues: [1-127]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPLNVGIVG TGIFARDRHL PSYQEFPDKF KVIAAFNRHK AKALDFAKVA DIPENKVYDN  60
   61 LDEILNDPHV DYIDALLPAQ FNADIVEKAV KAGKPVILEK PIAANLDQAK EIVKIAESTP 120
  121 LPVGVAE

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [296-322]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVNAEFLNFH EAVSKKDKSL YLGTPRT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 167.29073
Match: 1evjA_
Description: Glucose-fructose oxidoreductase, N-terminal domain; Glucose-fructose oxidoreductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 2.54843319568228 bayes_pls_golite062009
oxidoreductase activity 1.02788681172101 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [128-295]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NWLYLPCIKI AKEQIEKIGP VVAFTHNSTG PFVTQNKYLT TTWRQKPEHI GGFLSDGGVH  60
   61 QLALVISLLG EFGSVSALTR QVRERSGADD IVFATVQLKN KEVIGSFTYG SAFGATEKSV 120
  121 FLKVYGKNGT VTVDLSDKKD PVVKVKLGGS AEDNGDEQIF KVDNDESF

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [323-349]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AFHHLACVDA FLKSSAKNGD YVKIEQP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 167.29073
Match: 1evjA_
Description: Glucose-fructose oxidoreductase, N-terminal domain; Glucose-fructose oxidoreductase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle