| Protein: | LCB1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 558 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LCB1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..558] | [1..558] |
|
|
0.0 | [1..558] | [1..558] |
|
|
0.0 | [30..493] | [75..539] |
|
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0.0 | [72..493] | [175..600] |
|
|
0.0 | [30..493] | [75..539] |
|
|
0.0 | [38..497] | [100..543] |
|
|
0.0 | [6..527] | [49..589] |
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0.0 | [29..493] | [79..539] |
|
|
0.0 | [69..524] | [114..584] |
|
Region A: Residues: [1-85] |
1 11 21 31 41 51
| | | | | |
1 MAHIPEVLPK SIPIPAFIVT TSSYLWYYFN LVLTQIPGGQ FIVSYIKKSH HDDPYRTTVE 60
61 IGLILYGIIY YLSKPQQKKS LQAQK
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.511 | a.39.1 | EF-hand |
| View | Download | 0.632 | a.77.1 | DEATH domain |
| View | Download | 0.569 | d.201.1 | SRP19 |
| View | Download | 0.689 | a.5.6 | Hypothetical protein MTH1615 |
| View | Download | 0.455 | a.8.2 | Plasmid maintenance system epsilon/zeta, antidote epsilon subunit |
| View | Download | 0.429 | a.77.1 | DEATH domain |
| View | Download | 0.395 | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.382 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.373 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.348 | a.77.1 | DEATH domain |
| View | Download | 0.338 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.337 | a.64.1 | Saposin |
| View | Download | 0.336 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.334 | a.39.1 | EF-hand |
| View | Download | 0.321 | f.28.1 | Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.306 | a.23.5 | Hemolysin expression modulating protein HHA |
| View | Download | 0.304 | d.43.1 | Elongation factor Ts (EF-Ts), dimerisation domain |
| View | Download | 0.303 | a.133.1 | Phospholipase A2, PLA2 |
| View | Download | 0.298 | a.4.9 | Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 |
| View | Download | 0.286 | a.8.1 | Bacterial immunoglobulin/albumin-binding domains |
| View | Download | 0.271 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.266 | f.1.4 | Bcl-2 inhibitors of programmed cell death |
| View | Download | 0.263 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.262 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.257 | d.91.1 | N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 |
| View | Download | 0.253 | a.118.8 | TPR-like |
| View | Download | 0.252 | d.54.1 | Enolase N-terminal domain-like |
| View | Download | 0.244 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.243 | a.39.1 | EF-hand |
| View | Download | 0.240 | a.24.7 | FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) |
| View | Download | 0.236 | a.112.1 | Description not found. |
| View | Download | 0.235 | d.195.1 | YopH tyrosine phosphatase N-terminal domain |
| View | Download | 0.235 | a.39.1 | EF-hand |
| View | Download | 0.232 | a.4.3 | ARID-like |
| View | Download | 0.226 | a.64.1 | Saposin |
| View | Download | 0.226 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.220 | a.130.1 | Chorismate mutase II |
| View | Download | 0.219 | a.158.1 | F-box domain |
| View | Download | 0.211 | c.15.1 | BRCT domain |
| View | Download | 0.209 | a.64.1 | Saposin |
| View | Download | 0.207 | d.8.1 | Urease, gamma-subunit |
| View | Download | 0.206 | a.144.2 | Ribosomal protein L20 |
| View | Download | 0.205 | d.235.1 | Hypothetical protein Yhr087W |
| View | Download | 0.203 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.201 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.200 | a.50.1 | Anaphylotoxins (complement system) |
|
Region A: Residues: [86-153] |
1 11 21 31 41 51
| | | | | |
1 PNLSPQEIDA LIEDWEPEPL VDPSATDEQS WRVAKTPVTM EMPIQNHITI TRNNLQEKYT 60
61 NVFNLASN
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|
Region B: Residues: [412-558] |
1 11 21 31 41 51
| | | | | |
1 TLQKLSKSLH DSFASDDSLR SYVIVTSSPV SAVLHLQLTP AYRSRKFGYT CEQLFETMSA 60
61 LQKKSQTNKF IEPYEEEEKF LQSIVDHALI NYNVLITRNT IVLKQETLPI VPSLKICCNA 120
121 AMSPEELKNA CESVKQSILA CCQESNK
|
| Detection Method: | |
| Confidence: | 309.741366 |
| Match: | 1fc4A_ |
| Description: | 2-amino-3-ketobutyrate CoA ligase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [154-411] |
1 11 21 31 41 51
| | | | | |
1 NFLQLSATEP VKEVVKTTIK NYGVGACGPA GFYGNQDVHY TLEYDLAQFF GTQGSVLYGQ 60
61 DFCAAPSVLP AFTKRGDVIV ADDQVSLPVQ NALQLSRSTV YYFNHNDMNS LECLLNELTE 120
121 QEKLEKLPAI PRKFIVTEGI FHNSGDLAPL PELTKLKNKY KFRLFVDETF SIGVLGATGR 180
181 GLSEHFNMDR ATAIDITVGS MATALGSTGG FVLGDSVMCL HQRIGSNAYC FSACLPAYTV 240
241 TSVSKVLKLM DSNNDAVQ
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| Detection Method: | |
| Confidence: | 309.741366 |
| Match: | 1fc4A_ |
| Description: | 2-amino-3-ketobutyrate CoA ligase |
| Matching Structure (courtesy of the PDB): |
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