| Protein: | HAS1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 505 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HAS1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..505] | [1..505] |
|
|
0.0 | [4..427] | [183..619] |
|
|
0.0 | [4..426] | [142..577] |
|
|
0.0 | [4..426] | [142..577] |
|
|
0.0 | [4..427] | [183..619] |
|
|
0.0 | [2..493] | [68..569] |
|
Region A: Residues: [1-259] |
1 11 21 31 41 51
| | | | | |
1 MATPSNKRSR DSESTEEPVV DEKSTSKQNN AAPEGEQTTC VEKFEELKLS QPTLKAIEKM 60
61 GFTTMTSVQA RTIPPLLAGR DVLGAAKTGS GKTLAFLIPA IELLHSLKFK PRNGTGIIVI 120
121 TPTRELALQI FGVARELMEF HSQTFGIVIG GANRRQEAEK LMKGVNMLIA TPGRLLDHLQ 180
181 NTKGFVFKNL KALIIDEADR ILEIGFEDEM RQIIKILPNE DRQSMLFSAT QTTKVEDLAR 240
241 ISLRPGPLFI NVVPETDNS
|
| Detection Method: |  |
| Confidence: | 549.218487 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [260-410] |
1 11 21 31 41 51
| | | | | |
1 TADGLEQGYV VCDSDKRFLL LFSFLKRNQK KKIIVFLSSC NSVKYYAELL NYIDLPVLEL 60
61 HGKQKQQKRT NTFFEFCNAE RGILICTDVA ARGLDIPAVD WIIQFDPPDD PRDYIHRVGR 120
121 TARGTKGKGK SLMFLTPNEL GFLRYLKASK V
|
| Detection Method: | |
| Confidence: | 549.218487 |
| Match: | 1hv8A_ |
| Description: | Putative DEAD box RNA helicase |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [411-505] |
1 11 21 31 41 51
| | | | | |
1 PLNEYEFPEN KIANVQSQLE KLIKSNYYLH QTAKDGYRSY LQAYASHSLK TVYQIDKLDL 60
61 AKVAKSYGFP VPPKVNITIG ASGKTPNTKR RKTHK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.523 | a.1.1 | Globin-like |
| View | Download | 0.609 | a.74.1 | Cyclin-like |
| View | Download | 0.660 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.525 | a.60.9 | lambda integrase-like, N-terminal domain |
| View | Download | 0.630 | a.159.2 | FF domain |
| View | Download | 0.512 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.511 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.510 | a.74.1 | Cyclin-like |
| View | Download | 0.502 | a.74.1 | Cyclin-like |
| View | Download | 0.470 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.438 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.437 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.392 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.320 | c.26.3 | UDP-glucose/GDP-mannose dehydrogenase C-terminal domain |
| View | Download | 0.316 | a.59.1 | PAH2 domain |
| View | Download | 0.307 | a.74.1 | Cyclin-like |
| View | Download | 0.303 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.300 | a.12.1 | Kix domain of CBP (creb binding protein) |
| View | Download | 0.290 | a.44.1 | Disulphide-bond formation facilitator (DSBA), insertion domain |
| View | Download | 0.279 | a.77.1 | DEATH domain |
| View | Download | 0.273 | a.60.1 | SAM/Pointed domain |
| View | Download | 0.270 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.261 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.257 | a.60.8 | HRDC-like |
| View | Download | 0.257 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.256 | a.1.1 | Globin-like |
| View | Download | 0.246 | a.4.3 | ARID-like |
| View | Download | 0.237 | d.1.1 | Microbial ribonucleases |
| View | Download | 0.232 | a.64.1 | Saposin |
| View | Download | 0.219 | c.53.1 | Resolvase-like |
| View | Download | 0.214 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.213 | a.81.1 | N-terminal domain of DnaB helicase |
| View | Download | 0.213 | a.69.3 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain |
| View | Download | 0.210 | a.5.4 | Elongation factor TFIIS domain 2 |
| View | Download | 0.209 | a.64.1 | Saposin |
| View | Download | 0.207 | d.55.1 | Ribosomal protein L22 |
| View | Download | 0.206 | a.61.1 | Retroviral matrix proteins |
| View | Download | 0.203 | d.58.10 | Acylphosphatase-like |
