YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL33
Organism:	Saccharomyces cerevisiae
Length:	86 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL33.

Description	E-value	Query Range	Subject Range
RL30_PYRHO - 50S ribosomal protein L30P OS=Pyrococcus horikoshii GN=rpl30p PE=3 SV=1 RL30_PYRHO - 50S ribosomal protein L30P OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBR...	3.0E-22	[1..73]	[1..73]
RL30_PYRAB - 50S ribosomal protein L30P OS=Pyrococcus abyssi GN=rpl30p PE=3 SV=1 RL30_PYRAB - 50S ribosomal protein L30P OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rpl30p PE=3 SV=1	9.0E-22	[1..72]	[1..72]
RL30_PYRFU - 50S ribosomal protein L30P OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN... RL30_PYRFU - 50S ribosomal protein L30P OS=Pyrococcus furiosus GN=rpl30p PE=3 SV=1	1.0E-21	[1..72]	[1..72]
RL30_METTH - 50S ribosomal protein L30P OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 /... gi\|7440716 - gi\|7440716\|pir\|\|H69129 ribosomal protein L30 - Methanobacterium thermoautotrophicum (strain Delta H)	3.0E-20	[4..72]	[2..70]
RL7_ENCCU - 60S ribosomal protein L7 OS=Encephalitozoon cuniculi (strain GB-M1) GN=RPL7 PE=3 SV=1 RL7_ENCCU - 60S ribosomal protein L7 OS=Encephalitozoon cuniculi GN=RPL7 PE=3 SV=1	3.0E-20	[3..84]	[81..162]
gi\|15293877 - gi\|15293877\|gb\|AAK95131.1\| ribosomal protein L7 [Ictalurus punctatus]	4.0E-20	[2..72]	[101..172]
gi\|11228571 - gi\|11228571\|gb\|AAG33073.1\|AF175983_1 ribosomal protein L7 [Rana sylvatica]	1.0E-19	[2..72]	[81..152]
RL30_HALSA - 50S ribosomal protein L30P OS=Halobacterium salinarium GN=rpl30p PE=3 SV=1 RL30_HALSA - 50S ribosomal protein L30P OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=rp... RL30_HALS3 - 50S ribosomal protein L30P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl30p P...	1.0E-19	[5..77]	[3..75]
RL73_ARATH - 60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1	2.0E-19	[6..84]	[86..164]
gi\|206736 - gi\|206736\|gb\|AAA42075.1\| ribosomal protein L7	2.0E-19	[2..72]	[99..170]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFYKVTLSR SLIGVPHTTK SIVKSLGLGK RGSIVYKKVN PAIAGSLAKV KELVKVEVTE  60
   61 HELTPSQQRE LRKSNPGFIV EKRTID

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.29073
Match:	1bxyA_
Description:	Prokaryotic ribosomal protein L30
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits