YRC Public Data Repository - Protein Structure Prediction

Protein:	YMR262W
Organism:	Saccharomyces cerevisiae
Length:	313 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR262W.

Description	E-value	Query Range	Subject Range
gi\|173197 - gi\|173197\|gb\|AAA35223.1\| ORF3	2.0E-75	[1..313]	[1..313]
YABD_BACSU - Uncharacterized metal-dependent hydrolase YabD OS=Bacillus subtilis (strain 168) GN=yabD PE=3 SV=1 YABD_BACSU - Uncharacterized deoxyribonuclease YabD OS=Bacillus subtilis GN=yabD PE=3 SV=1 gi\|221312170 - gi\|221312170\|ref\|ZP_03593975.1\| hypothetical protein BsubsN3_00195 [Bacillus subtilis subsp. subtili... gi\|221321366 - gi\|221321366\|ref\|ZP_03602660.1\| hypothetical protein BsubsS_00195 [Bacillus subtilis subsp. subtilis... gi\|221317103 - gi\|221317103\|ref\|ZP_03598397.1\| hypothetical protein BsubsJ_00195 [Bacillus subtilis subsp. subtilis...	4.0E-69	[3..313]	[1..253]
gi\|25318571 - pir\|\|E97830 hypothetical protein RC1045 [imported] - Rickettsia conorii (strain Malish 7) gi\|15620164, gi\|... - gi\|15892968\|ref\|NP_360682.1\| hypothetical protein RC1045 [Rickettsia conorii str. Malish 7], gi\|1562...	2.0E-66	[3..312]	[1..295]
YH86_SYNY3, Y178... - (P73335) Putative deoxyribonuclease sll1786 (EC 3.1.21.-), Uncharacterized deoxyribonuclease sll1786... gi\|7448423 - pir\|\|S77519 hypothetical protein sll1786 - Synechocystis sp. (strain PCC 6803) DTD3_SYNY3 - D-aminoacyl-tRNA deacylase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=dtd3 PE=1 SV=1	3.0E-65	[2..313]	[1..256]
gi\|17546506 - gi\|17546506\|ref\|NP_519908.1\| hypothetical protein RSc1787 [Ralstonia solanacearum GMI1000] gi\|17428804 - gi\|17428804\|emb\|CAD15489.1\| putative tatd-related deoxyribonuclease; protein [Ralstonia solanacearum...	8.0E-65	[3..312]	[1..262]
gi\|25318599 - pir\|\|AD3375 sec-independent protein tatD (EC 3.1.21.-) [imported] - Brucella melitensis (strain 16M) gi\|17987269, gi\|... - gi\|17987269\|ref\|NP_539903.1\| SEC-independent protein TATD [Brucella melitensis 16M], gi\|17982946\|gb\|... gi\|237815421, gi... - gi\|237815421\|ref\|ZP_04594419.1\| hydrolase, TatD family [Brucella abortus str. 2308 A], gi\|237790258\|...	1.0E-64	[1..312]	[1..255]
gi\|12722082, gi\|... - gi\|15603540\|ref\|NP_246614.1\| hypothetical protein PM1675 [Pasteurella multocida subsp. multocida str...	2.0E-64	[2..313]	[1..256]
gi\|19745392, gi\|... - gi\|19747500\|gb\|AAL97027.1\| conserved hypothetical protein [Streptococcus pyogenes MGAS8232], gi\|1974...	2.0E-64	[4..313]	[21..272]
gi\|170662728, gi... - gi\|170662728\|gb\|EDT15411.1\| hydrolase, TatD family [Clostridium perfringens E str. JGS1987], gi\|1682... gi\|168209758, gi... - gi\|170712156\|gb\|EDT24338.1\| hydrolase, TatD family [Clostridium perfringens B str. ATCC 3626], gi\|16... gi\|18311502, gi\|... - gi\|18311502\|ref\|NP_563436.1\| hydrolase, TatD family [Clostridium perfringens str. 13], gi\|18146186\|d... gi\|168217637, gi... - gi\|182380288\|gb\|EDT77767.1\| hydrolase, TatD family [Clostridium perfringens NCTC 8239], gi\|168217637... gi\|177910544, gi... - gi\|182624326\|ref\|ZP_02952111.1\| hydrolase, TatD family [Clostridium perfringens D str. JGS1721], gi\|...	1.0E-63	[2..313]	[3..255]

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Predicted Domain #1

Region A:
Residues: [1-313]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKLVDAHCH VITDPDNTFC GDDGGSQGTL RCVMSSNPYD WNNLKKLAGR STSKNDICVG  60
   61 FGVHPWYSHL FYVGSRRDKV SHYQDVLEYK NEEQFDSLVQ VLPEPLDLEE YIKREFNDTL 120
  121 VSVIGEIGLD KLFRLPANGF YMQNEKARLT TVKVKLSHQE TVFRRFWRLA RHTSKPISIH 180
  181 DVKCHGKLND ICNEELLTYH SVKICLHSYT GSKETLLGQW LKKFPPDRIF VSLSKWINFK 240
  241 DPEEGDALVR SLPSTCILTE TDYPIDNPDP SYQKALTEQL QYLNAQIARA WDETLDASQA 300
  301 ALRVYENFQK FIK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	6.69897
Match:	PF01026
Description:	TatD related DNase

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits