YRC Public Data Repository - Protein Structure Prediction

Protein:	COX7
Organism:	Saccharomyces cerevisiae
Length:	60 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COX7.

Description	E-value	Query Range	Subject Range
gi\|49641048, gi\|... - gi\|50312625\|ref\|XP_451916.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641048\|emb\|CAH0230...	81.0	[0..3]	[59..6]
gi\|44985579 - gi\|44985579\|gb\|AAS54275.1\| AGL216Wp [Ashbya gossypii ATCC 10895] gi\|45200881, gi\|... - gi\|45200881\|ref\|NP_986451.1\| AGL216Wp [Ashbya gossypii ATCC 10895], gi\|44985579\|gb\|AAS54275.1\| AGL21...	78.0	[0..3]	[60..4]
orf19.227, orf19... - COX7 CGDID:CAL0003929 Assembly 19, Contig19-10046 (478, 149) CDS, reverse complemented, translated u... gi\|68471766, gi\|... - gi\|68471766\|ref\|XP_719926.1\| hypothetical protein CaO19.227 [Candida albicans SC5314], gi\|68471499\|r...	57.0	[0..4]	[56..55]
gi\|49656736\|emb\|... - unnamed protein product [Debaryomyces hansenii CBS767] gi\|49656736, gi\|... - gi\|50424951\|ref\|XP_461067.1\| hypothetical protein DEHA0F17600g [Debaryomyces hansenii CBS767], gi\|49...	53.0	[0..1]	[56..1]

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Predicted Domain #1

Region A:
Residues: [1-60]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANKVIQLQK IFQSSTKPLW WRHPRSALYL YPFYAIFAVA VVTPLLYIPN AIRGIKAKKA  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.912	a.5.6	Hypothetical protein MTH1615

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits