YRC Public Data Repository - Protein Structure Prediction

Protein:	GFD1
Organism:	Saccharomyces cerevisiae
Length:	188 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GFD1.

Description	E-value	Query Range	Subject Range
gi\|207342109 - gi\|207342109\|gb\|EDZ69973.1\| YMR255Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190408481 - gi\|190408481\|gb\|EDV11746.1\| mRNA transport factor GFD1 [Saccharomyces cerevisiae RM11-1a] GFD1_YEAST - mRNA transport factor GFD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GFD1 PE=1 SV=... GFD1 - Coiled-coiled protein of unknown function, identified as a high-copy suppressor of a dbp5 mutation	7.0E-66	[1..188]	[1..188]
gi\|50900954, gi\|... - gi\|50900954\|ref\|XP_462910.1\| putative retrotransposon protein [Oryza sativa (japonica cultivar-group...	4.0E-5	[8..181]	[265..436]
gi\|1160355 - gi\|1160355\|gb\|AAB00542.1\| UNC-89	0.003	[15..140]	[1577..1700]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLESIWADA PDEEPIKKQK PSHKRSNNNK KNNNSRWSNE SSSNNKKKDS VNKVKNNKGN  60
   61 HESKTKNKIK ETLPREKKPP HSQGKISPVS ESLAINPFSQ KATEISPPPV SPSKMKTTKT 120
  121 QSKQDTASKM KLLKKKIEEQ REILQKTHHK NQQQQVLMDF LNDEGSSNWV DDDEEELILQ 180
  181 RLKTSLKI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits