YRC Public Data Repository - Protein Structure Prediction

Protein:	TAF7
Organism:	Saccharomyces cerevisiae
Length:	590 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TAF7.

Description	E-value	Query Range	Subject Range
MYH4_PIG - Myosin-4 OS=Sus scrofa GN=MYH4 PE=2 SV=1	1.0E-62	[120..587]	[839..1316]
MYH2_BOVIN - Myosin-2 OS=Bos taurus GN=MYH2 PE=2 SV=1	1.0E-61	[120..587]	[842..1319]
gi\|14250231, gi\|... - ref\|NP_659210.1\| myosin, heavy polypeptide 2, skeletal muscle, adult [Mus musculus], gi\|14250231\|gb...	3.0E-61	[120..587]	[844..1321]
gi\|12053672 - gi\|12053672\|emb\|CAC20413.1\| beta-myosin heavy chain [Homo sapiens]	3.0E-60	[56..578]	[773..1305]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	3.0E-60	[56..578]	[410..942]
MYH7_MESAU - Myosin-7 OS=Mesocricetus auratus GN=MYH7 PE=2 SV=2	4.0E-60	[56..578]	[772..1304]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVIRIKKPR GPGEKDQPLE GEPKLKRIRI KTKVTDEDIK PKPKLKINLK KKKESADGKE  60
   61 KKNSLKLKLN LKKNEEPVKK IHKAPKLRLK PIRIPGEAYD SEASDIEDDP LIESGVILRI 120
  121 LPDIQLEFVK NSLESGDYSG ISIKWKNERH AV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	1i84S_
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [153-436]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTINDVMYGA ILVDLPTVIE VNKSVDRKNL LKTFDVSQML LCIRPIQEEE EVYALEAPDT  60
   61 EDLVVKHFEG IEDEIWENKE TFLKGYNGAP LSDMEAKHLK EIALKGYDYK HGISPPLYNV 120
  121 RNRRFRRKMD PNEIDYVEKV VDMLLKQDKQ AEEVSYDLVD KSELQARQER VSSWENFKEE 180
  181 PGEPLSRPAL KKEEIHTIAS AVGKQGAEEE GEEGMEEEEE EDLDLGAAFE SEEEGSGAEG 240
  241 DKEQQQEEVG DEVDQDTGGE DDDDDDDGDI EAAGGESESD DEKD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.69897
Match:	1i84S_
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [437-590]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENRQHTELLA DELNELETTL AHTKHKLSKA TNPLLKSRFI DSIKKLEKEA ELKRKQLQQT  60
   61 EDSVQKQHQH RSDAETANNV EEEEEEEEEE EEEDEVDEDE EDDEENDEDE DNVHEREHIQ 120
  121 ENKVVRELDE APAEETLDQN DLDMMMLFGA EGDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	2.69897
Match:	1jchA_
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits