YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL44
Organism:	Saccharomyces cerevisiae
Length:	98 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL44.

Description	E-value	Query Range	Subject Range
gi\|49641634 - gi\|49641634\|emb\|CAH01352.1\| KLLA0C06809p [Kluyveromyces lactis] gi\|49641634, gi\|... - gi\|50305085\|ref\|XP_452501.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641634\|emb\|CAH0135...	129.0	[0..1]	[96..1]
RM44_ASHGO - 60S ribosomal protein L44, mitochondrial OS=Ashbya gossypii GN=MRPL44 PE=3 SV=1 RM44_ASHGO - 54S ribosomal protein L44, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9...	119.0	[0..1]	[96..1]
gi\|49658049\|emb\|... - unnamed protein product [Debaryomyces hansenii CBS767] gi\|50427533, gi\|... - gi\|50427533\|ref\|XP_462379.1\| hypothetical protein DEHA0G20515g [Debaryomyces hansenii CBS767], gi\|49...	88.0	[0..1]	[95..1]
gi\|32409303, gi\|... - gi\|38567024\|emb\|CAE76322.1\| probable ribosomal protein YmL44, mitochondrial [Neurospora crassa], gi\|... gi\|85116952 - gi\|85116952\|ref\|XP_965145.1\| hypothetical protein NCU00952 [Neurospora crassa OR74A]	79.0	[0..1]	[91..1]
gi\|169602849, gi... - gi\|169602849\|ref\|XP_001794846.1\| hypothetical protein SNOG_04427 [Phaeosphaeria nodorum SN15], gi\|11...	74.0	[0..1]	[95..1]
gi\|145020554, gi... - gi\|39951913\|ref\|XP_363673.1\| hypothetical protein MGG_01599 [Magnaporthe grisea 70-15], gb\|EAA55948....	64.0	[0..2]	[90..1]
RM44_SCHPO - 54S ribosomal protein L44, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=m... mrpl44 - mitochondrial ribosomal protein subunit l44	61.0	[0..1]	[96..1]

Back

Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITKYFSKVI VRFNPFGKEA KVARLVLAAI PPTQRNMGTQ IQSEIISDYN KVKPLVKVTY  60
   61 KDKKEMEVDP SNMNFQELAN HFDRHSKQLD LKHMLEMH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.03
Match:	1s3aA
Description:	NMR Solution Structure of Subunit B8 from Human NADH-Ubiquinone Oxidoreductase Complex I (CI-B8)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits