YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL36A
Organism:	Saccharomyces cerevisiae
Length:	100 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL36A.

Description	E-value	Query Range	Subject Range
gi\|94368091, gi\|... - gi\|94368091\|ref\|XP_985262.1\| PREDICTED: similar to ribosomal protein L36 [Mus musculus], gi\|82884369...	151.0	[0..1]	[99..38]
gi\|67528508, gi\|... - gi\|67528508\|ref\|XP_662056.1\| hypothetical protein AN4452.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	144.0	[0..4]	[99..412]
gi\|109017685 - gi\|109017685\|ref\|XP_001117613.1\| PREDICTED: similar to ribosomal protein L36 [Macaca mulatta]	142.0	[0..1]	[94..1]
gi\|76607703 - gi\|76607703\|ref\|XP_587998.2\| PREDICTED: similar to ribosomal protein L36 [Bos taurus]	141.0	[0..1]	[94..1]
gi\|55664071 - gi\|55664071\|ref\|XP_529118.1\| PREDICTED: similar to 60S ribosomal protein L36 [Pan troglodytes]	139.0	[0..1]	[99..1]
gi\|4689134 - gi\|4689134\|gb\|AAD27776.1\|AF077043_1 60S ribosomal protein L36 [Homo sapiens]	138.0	[0..1]	[94..1]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVKTGIAIG LNKGKKVTSM TPAPKISYKK GAASNRTKFV RSLVREIAGL SPYERRLIDL  60
   61 IRNSGEKRAR KVAKKRLGSF TRAKAKVEEM NNIIAASRRH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	67.387216
Match:	PF01158.9
Description:	No description for PF01158.9 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.748	N/A	N/A	a.118.11	Cytochrome c oxidase subunit E
View	Download	0.738	N/A	N/A	a.118.8	TPR-like
View	Download	0.466	N/A	N/A	a.118.8	TPR-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits