YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPL24
Organism:	Saccharomyces cerevisiae
Length:	258 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL24.

Description	E-value	Query Range	Subject Range
RM24_YEAST - 54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... MRPL24 - Mitochondrial ribosomal protein of the large subunit	0.0	[1..258]	[1..258]
mRpL28-PA, FBpp0... - The gene mitochondrial ribosomal protein L28 is referred to in FlyBase by the symbol Dmel\mRpL28 (CG...	9.0E-36	[6..162]	[17..174]
CE19599 - status:Confirmed UniProt:O76606 protein_id:AAC26291.1	5.0E-31	[22..163]	[52..198]
RL28_AGRFC - 50S ribosomal protein L28 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=rpmB PE=3 SV=1 gi\|25524569 - gi\|25524569\|pir\|\|AG3001 50S ribosomal protein L28 [imported] - Agrobacterium tumefaciens (strain C58...	5.0E-30	[69..165]	[2..95]
RL28_RHIME - 50S ribosomal protein L28 OS=Rhizobium meliloti GN=rpmB PE=3 SV=1 RL28_RHIME - 50S ribosomal protein L28 OS=Rhizobium meliloti (strain 1021) GN=rpmB PE=3 SV=1	1.0E-29	[69..165]	[2..95]
gi\|237816370, gi... - gi\|237816370\|ref\|ZP_04595363.1\| ribosomal protein L28 [Brucella abortus str. 2308 A], gi\|237788437\|g... gi\|254690152 - gi\|254690152\|ref\|ZP_05153406.1\| 50S ribosomal protein L28 [Brucella abortus bv. 6 str. 870] RL28_BRUA1 - 50S ribosomal protein L28 OS=Brucella abortus (strain S19) GN=rpmB PE=3 SV=1 gi\|225628209, gi... - gi\|225628209\|ref\|ZP_03786244.1\| ribosomal protein L28 [Brucella ceti str. Cudo], gi\|225617034\|gb\|EEH... RL28_BRUA2 - 50S ribosomal protein L28 OS=Brucella abortus (strain 2308) GN=rpmB PE=3 SV=1 RL28_BRUMB - 50S ribosomal protein L28 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=rpmB PE=3 SV=1 RL28_BRUSU - 50S ribosomal protein L28 OS=Brucella suis biovar 1 (strain 1330) GN=rpmB PE=3 SV=1 gi\|254700652 - gi\|254700652\|ref\|ZP_05162480.1\| 50S ribosomal protein L28 [Brucella suis bv. 5 str. 513] RL28_BRUME - 50S ribosomal protein L28 OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN... gi\|254705022 - gi\|254705022\|ref\|ZP_05166850.1\| 50S ribosomal protein L28 [Brucella suis bv. 3 str. 686] gi\|254694642 - gi\|254694642\|ref\|ZP_05156470.1\| 50S ribosomal protein L28 [Brucella abortus bv. 3 str. Tulya] gi\|254696267 - gi\|254696267\|ref\|ZP_05158095.1\| 50S ribosomal protein L28 [Brucella abortus bv. 2 str. 86/8/59] RL28_BRUSU - 50S ribosomal protein L28 OS=Brucella suis GN=rpmB PE=3 SV=1 gi\|254713576 - gi\|254713576\|ref\|ZP_05175387.1\| 50S ribosomal protein L28 [Brucella ceti M644/93/1] RL28_BRUSI - 50S ribosomal protein L28 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=rpmB PE=3 SV=1 gi\|254716070 - gi\|254716070\|ref\|ZP_05177881.1\| 50S ribosomal protein L28 [Brucella ceti M13/05/1] RL28_BRUC2 - 50S ribosomal protein L28 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=rpmB PE=3 SV=1 gi\|254707461 - gi\|254707461\|ref\|ZP_05169289.1\| 50S ribosomal protein L28 [Brucella pinnipedialis M163/99/10] gi\|254708997 - gi\|254708997\|ref\|ZP_05170808.1\| 50S ribosomal protein L28 [Brucella pinnipedialis B2/94] gi\|254731185 - gi\|254731185\|ref\|ZP_05189763.1\| 50S ribosomal protein L28 [Brucella abortus bv. 4 str. 292] RL28_BRUME - 50S ribosomal protein L28 OS=Brucella melitensis GN=rpmB PE=3 SV=1 RL28_BRUAB - 50S ribosomal protein L28 OS=Brucella abortus biovar 1 (strain 9-941) GN=rpmB PE=3 SV=1 RL28_BRUAB - 50S ribosomal protein L28 OS=Brucella abortus GN=rpmB PE=3 SV=1	1.0E-28	[69..165]	[2..95]
gi\|241760862, gi... - gi\|241760862\|ref\|ZP_04758951.1\| ribosomal protein L28 [Zymomonas mobilis subsp. mobilis ATCC 10988],... RL28_ZYMMO - 50S ribosomal protein L28 OS=Zymomonas mobilis GN=rpmB PE=3 SV=1 RL28_ZYMMO - 50S ribosomal protein L28 OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=rpm...	1.0E-27	[69..165]	[2..95]
RL28_RHILO - 50S ribosomal protein L28 OS=Rhizobium loti (strain MAFF303099) GN=rpmB PE=3 SV=1 RL28_RHILO - 50S ribosomal protein L28 OS=Rhizobium loti GN=rpmB PE=3 SV=1	1.0E-27	[69..165]	[2..95]
gi\|221482938 - gi\|221482938\|gb\|EEE21269.1\| conserved hypothetical protein [Toxoplasma gondii GT1] gi\|3746419, gi\|3... - gi\|95007437\|emb\|CAJ20658.1\| large ribosomal protein l28 precursor, putative [Toxoplasma gondii RH], ... gi\|95007437\|emb\|... - large ribosomal protein l28 precursor, putative [Toxoplasma gondii]	4.0E-26	[69..191]	[144..251]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKIFRPFQL TRGFTSSVKN FRQWRLIETR KIAKQPNYQV GDAKPLHMPK ERKKFPDYKY  60
   61 GESNIFKQSN KGLYGGSFVQ FGNNISESKA KTRKKWLPNV VKKGLWSETL NRKISIKMTA 120
  121 KVLKTISKEG GIDNYLTKEK SARIKELGPT GWKLRYRVLK RKDEIENPP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	29.031517
Match:	PF00830
Description:	Ribosomal L28 family

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [170-258]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HKDAPIIEMA GGKKAKIYYD EIVNGSPRKI SVGRRRLMSF LYPLEKLEYR SVGKDLNYKK  60
   61 FVELFADVPV KDILARLEDH KFDLSTITV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.510	0.947	structural constituent of ribosome	b.40.4	Nucleic acid-binding proteins
View	Download	0.500	0.947	structural constituent of ribosome	d.64.1	eIF1-like
View	Download	0.433	0.947	structural constituent of ribosome	a.144.1	PABC (PABP) domain
View	Download	0.473	0.947	structural constituent of ribosome	d.189.1	PX domain
View	Download	0.510	0.947	structural constituent of ribosome	b.40.4	Nucleic acid-binding proteins
View	Download	0.510	0.947	structural constituent of ribosome	d.54.1	Enolase N-terminal domain-like
View	Download	0.510	0.947	structural constituent of ribosome	d.54.1	Enolase N-terminal domain-like
View	Download	0.500	0.947	structural constituent of ribosome	d.64.1	eIF1-like
View	Download	0.473	0.947	structural constituent of ribosome	d.189.1	PX domain
View	Download	0.433	0.947	structural constituent of ribosome	a.144.1	PABC (PABP) domain
View	Download	0.432	0.947	structural constituent of ribosome	c.55.7	Methylated DNA-protein cysteine methyltransferase domain
View	Download	0.390	0.947	structural constituent of ribosome	a.51.1	Cytochrome c oxidase subunit h
View	Download	0.341	0.947	structural constituent of ribosome	d.15.6	Superantigen toxins, C-terminal domain
View	Download	0.336	0.947	structural constituent of ribosome	a.40.1	Calponin-homology domain, CH-domain
View	Download	0.313	0.947	structural constituent of ribosome	b.40.2	Bacterial enterotoxins
View	Download	0.288	0.947	structural constituent of ribosome	a.112.1	Description not found.
View	Download	0.286	0.947	structural constituent of ribosome	d.64.1	eIF1-like
View	Download	0.286	0.947	structural constituent of ribosome	a.21.1	HMG-box
View	Download	0.277	0.947	structural constituent of ribosome	d.15.5	Staphylokinase/streptokinase
View	Download	0.273	0.947	structural constituent of ribosome	a.23.4	Mitochondrial import receptor subunit Tom20
View	Download	0.272	0.947	structural constituent of ribosome	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.265	0.947	structural constituent of ribosome	a.74.1	Cyclin-like
View	Download	0.261	0.947	structural constituent of ribosome	a.112.1	Description not found.
View	Download	0.239	0.947	structural constituent of ribosome	b.55.1	PH domain-like
View	Download	0.236	0.947	structural constituent of ribosome	b.1.1	Immunoglobulin
View	Download	0.231	0.947	structural constituent of ribosome	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like
View	Download	0.228	0.947	structural constituent of ribosome	c.55.4	Translational machinery components
View	Download	0.226	0.947	structural constituent of ribosome	b.89.1	Cyanovirin-N
View	Download	0.224	0.947	structural constituent of ribosome	d.79.1	YjgF-like
View	Download	0.214	0.947	structural constituent of ribosome	d.93.1	SH2 domain
View	Download	0.208	0.947	structural constituent of ribosome	a.177.1	Sigma2 domain of RNA polymerase sigma factors
View	Download	0.207	0.947	structural constituent of ribosome	d.44.1	Fe,Mn superoxide dismutase (SOD), C-terminal domain
View	Download	0.207	0.947	structural constituent of ribosome	a.35.1	lambda repressor-like DNA-binding domains
View	Download	0.206	0.947	structural constituent of ribosome	c.2.1	NAD(P)-binding Rossmann-fold domains
View	Download	0.205	0.947	structural constituent of ribosome	a.22.1	Histone-fold
View	Download	0.205	0.947	structural constituent of ribosome	a.76.1	Iron-dependent represor protein, dimerization domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits