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View Structure Prediction Details

Protein: SPG5
Organism: Saccharomyces cerevisiae
Length: 458 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPG5.

Description E-value Query
Range
Subject
Range
gi|726278 - gi|726278|gb|AAB60288.1| unknown
0.0 [1..249] [1..249]

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Predicted Domain #1
Region A:
Residues: [1-255]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITQPAKCPL LIRISAFRSG SSFLLYVHCK SINKSWQPKP GNPLRNARLN YINIKDMWRE  60
   61 ASLPSHFAFH DLKWFFHNRR APTRNMAVGG NNWSMWLRMS RVHLRQITKS LDRTLISLSH 120
  121 GNFSHQYNRN IFVTWWKSLF EASTAFRRAS GLTVSPLTRR GIARFDHFRP VPNVSKFASF 180
  181 PRVPKGAPRG LFTNWNMTTS KRLLGQRAYS TSSIKFTQEA VNNMTISLRC FFNSLGGLNQ 240
  241 CSHSNSCKAY QNASN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [256-458]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTSKQDHVQP VALKKLSQKD INFIRNLELF KIMKTQNEVV DETSAYYMEK PGSYIEFTIS  60
   61 EFNVNGTFSA PLSFLDPSLL ADLDEMIRNY KYELKSIYSS VDMILQNYGS LPITFHRNKI 120
  121 RIHFPNSTVV ETEKLIAGLN IATGVIYADT SPDISLEGTN LNALVNVDNS GSVWSFVKEP 180
  181 SFPSRSAFSP ILSDASYDTY ELV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle