YRC Public Data Repository - Protein Structure Prediction

Protein:	MRPS17
Organism:	Saccharomyces cerevisiae
Length:	237 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPS17.

Description	E-value	Query Range	Subject Range
gi\|49528106, gi\|... - gi\|50292721\|ref\|XP_448793.1\| unnamed protein product [Candida glabrata], gi\|49528106\|emb\|CAG61763.1\|... gi\|49528106 - gi\|49528106\|emb\|CAG61763.1\| unnamed protein product [Candida glabrata]	191.0	[0..1]	[232..1]
gi\|49642766 - gi\|49642766\|emb\|CAH00728.1\| KLLA0D12782p [Kluyveromyces lactis] gi\|49642766, gi\|... - gi\|50307307\|ref\|XP_453632.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642766\|emb\|CAH0072...	187.0	[0..1]	[232..1]
gi\|45198365, gi\|... - gi\|45198365\|ref\|NP_985394.1\| AFL156Wp [Ashbya gossypii ATCC 10895], gi\|44984252\|gb\|AAS53218.1\| AFL15... gi\|44984252 - gi\|44984252\|gb\|AAS53218.1\| AFL156Wp [Ashbya gossypii ATCC 10895]	181.0	[0..1]	[232..1]
gi\|483041 - gi\|483041\|pir\|\|B48329 hypothetical protein (c-His5 3' region) - yeast (Candida maltosa) (fragment)	140.0	[0..1]	[133..1]
gi\|49656281, gi\|... - gi\|50424055\|ref\|XP_460612.1\| hypothetical protein DEHA0F06270g [Debaryomyces hansenii CBS767], gi\|49...	130.0	[0..1]	[229..1]
gi\|12836870 - gi\|12836870\|dbj\|BAB23843.1\| unnamed protein product [Mus musculus]	129.0	[0..4]	[89..71]
gi\|46096947, gi\|... - gi\|71005596\|ref\|XP_757464.1\| hypothetical protein UM01317.1 [Ustilago maydis 521], ref\|XP_398932.1\| ...	128.0	[0..4]	[89..192]
gi\|336392 - gi\|336392\|gb\|AAA84030.1\| ribosomal protein S17	124.0	[0..2]	[104..59]
gi\|3402191, gi\|7... - pir\|\|T07165 ribosomal protein S11 - Cyanophora paradoxa (fragment), gi\|3402191\|emb\|CAA06411.1\| 40S r...	123.0	[0..4]	[82..73]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARQNFLGLV VSQGKMQKTV KVRVETKVFN KKINKELFHR RDYLVHDEGE ISREGDLVRI  60
   61 EATRPLSKRK FFAIAEIIRN KGQQFALYES EAQLSVAKEE AQKAKEFLDK RS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.69897
Match:	1qd7I
Description:	30S subunit
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [113-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRENKLNEKT TLLRDIRTIQ DALSSGSTPK ELLEIKQRYG IQDFSQETVR QLLQLDISGL  60
   61 EVNLEKQRSL IDRIQTRLSE LLSNDLKCDQ FLKDHGVEDP LTLKKNIKKN LLRKHVMMDM 120
  121 QQPSQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits