YRC Public Data Repository - Protein Structure Prediction

Protein:	ATG16
Organism:	Saccharomyces cerevisiae
Length:	150 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATG16.

Description	E-value	Query Range	Subject Range
gi\|114583972 - gi\|114583972\|ref\|XP_516158.2\| PREDICTED: APG16 autophagy 16-like isoform 11 [Pan troglodytes]	161.0	[0..17]	[147..78]
gi\|39843342 - gi\|39843342\|gb\|AAR32130.1\| APG16L beta [Homo sapiens]	158.0	[0..17]	[147..78]
A16L1_PONPY - Autophagy-related protein 16-1 - Pongo pygmaeus (Orangutan) A16L1_PONAB - Autophagy-related protein 16-1 OS=Pongo abelii GN=ATG16L1 PE=2 SV=1	158.0	[0..17]	[147..78]
gi\|109101510 - gi\|109101510\|ref\|XP_001114803.1\| PREDICTED: APG16 autophagy 16-like isoform 5 [Macaca mulatta]	157.0	[0..17]	[147..78]
gi\|76614667 - gi\|76614667\|ref\|XP_877095.1\| PREDICTED: similar to Autophagy protein 16-like (APG16-like) isoform 5 ...	153.0	[0..17]	[147..78]

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Predicted Domain #1

Region A:
Residues: [1-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNFIITERK KAKEERSNPQ TDSMDDLLIR RLTDRNDKEA HLNELFQDNS GAIGGNIVSH  60
   61 DDALLNTLAI LQKELKSKEQ EIRRLKEVIA LKNKNTERLN DELISGTIEN NVLQQKLSDL 120
  121 KKEHSQLVAR WLKKTEKETE AMNSEIDGTK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.154902
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits