| Protein: | RIM13 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 727 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIM13.
| Description | E-value | Query Range |
Subject Range |
|
|
565.0 | [0..30] | [506..14] |
|
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559.0 | [0..30] | [506..14] |
|
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557.0 | [0..30] | [517..14] |
|
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557.0 | [0..30] | [506..14] |
|
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556.0 | [0..30] | [506..14] |
|
|
556.0 | [0..30] | [506..14] |
|
|
556.0 | [0..30] | [506..14] |
|
Region A: Residues: [1-219] |
1 11 21 31 41 51
| | | | | |
1 MNDWHEFNAA IKSIYCNAEG DSSSIINRLV GLAMKSEDST FIEAVLVLKE NVSKVDKQLR 60
61 FLWLTSTINS RFYPPIPISE ASPVSWNKTE YCAPGTEELQ RRYPGRAKLQ NEEDYSGGIE 120
121 QCRDVPDCSL VASLINLRSK NLNLPLIKQI SSTKYHVNLS FNGSNKRLVT VDISQIPTSV 180
181 DGKQLSLKSN DISDKIGELA LLLVSKGTYS TDGSNISID
|
| Detection Method: |  |
| Confidence: | 143.0 |
| Match: | 1kfuL |
| Description: | Calpain large subunit, C-terminal domain (domain IV); Calpain large subunit, middle domain (domain III); Calpain large subunit, catalytic domain (domain II) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [220-324] |
1 11 21 31 41 51
| | | | | |
1 TYRLSGFLPE ITQVNSYPFE KLWKFHKSNL CLMGAGTGNR SNDMIKPLVE NHDYSIIDIT 60
61 YDSRLVKLRD PRNSALNVEI SYEQYLKNFK QLYLNWNQEK LFKRS
|
| Detection Method: | |
| Confidence: | 143.0 |
| Match: | 1kfuL |
| Description: | Calpain large subunit, C-terminal domain (domain IV); Calpain large subunit, middle domain (domain III); Calpain large subunit, catalytic domain (domain II) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [325-455] |
1 11 21 31 41 51
| | | | | |
1 QVLHFRYDTS RYNKFSIVAD KPLFHLVNNS KVTETVWLLL ESHLQDEGSQ ENRSVSFLNE 60
61 APECIICPIE PPVECGGNHI GLQLVKLRLD AETERLLYCY STTNNNFSIH SFSVVKEICF 120
121 QRLKDTKSLF A
|
| Detection Method: | |
| Confidence: | 143.0 |
| Match: | 1kfuL |
| Description: | Calpain large subunit, C-terminal domain (domain IV); Calpain large subunit, middle domain (domain III); Calpain large subunit, catalytic domain (domain II) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [456-525] |
1 11 21 31 41 51
| | | | | |
1 KVLFSFPYEI EGKASFDTCN FFQNPTFELE VHSEQDYQVL MDAACISTSS HDLINIQVYY 60
61 FNDYELIKPI
|
| Detection Method: | |
| Confidence: | 143.0 |
| Match: | 1kfuL |
| Description: | Calpain large subunit, C-terminal domain (domain IV); Calpain large subunit, middle domain (domain III); Calpain large subunit, catalytic domain (domain II) |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [526-595] |
1 11 21 31 41 51
| | | | | |
1 MFDNHYQPGQ GLKQDVPILT NVKYMIVCST YGPPASTEFE LLASIRLSSS WRLISGITLR 60
61 SVNLIYGTYP
|
| Detection Method: | |
| Confidence: | 18.522879 |
| Match: | 1df0A |
| Description: | Calpain large subunit, C-terminal domain (domain IV); Calpain large subunit, middle domain (domain III); Calpain large subunit, catalytic domain (domain II) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [596-727] |
1 11 21 31 41 51
| | | | | |
1 YHCRNRFHWK ETSDKLKIQM TLPTKKYSTN KLFIRVVPVE SSARLRMRCN IFEPESALCV 60
61 YECQEYRTCP SGGIVIPDLE VSRTNIVVLM IERSVPISSC LPTEGQLDEL ELFVGSSQKI 120
121 RIEKYSDDVI PK
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.587 | b.60.1 | Lipocalins |
| View | Download | 0.334 | b.1.1 | Immunoglobulin |
| View | Download | 0.318 | b.60.1 | Lipocalins |
| View | Download | 0.318 | b.60.1 | Lipocalins |
| View | Download | 0.281 | b.60.1 | Lipocalins |
| View | Download | 0.255 | b.1.1 | Immunoglobulin |
| View | Download | 0.248 | b.1.10 | Clathrin adaptor appendage domain |
| View | Download | 0.234 | b.1.1 | Immunoglobulin |
| View | Download | 0.230 | b.61.1 | Avidin/streptavidin |
| View | Download | 0.228 | b.61.4 | Quinohemoprotein amine dehydrogenase A chain, domain 3 |
