YRC Public Data Repository - Protein Structure Prediction

Protein:	IMP1
Organism:	Saccharomyces cerevisiae
Length:	190 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IMP1.

Description	E-value	Query Range	Subject Range
IMP1_YEAST - Mitochondrial inner membrane protease subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2... IMP1 - Catalytic subunit of the mitochondrial inner membrane peptidase complex, required for maturation of ... gi\|190408376 - gi\|190408376\|gb\|EDV11641.1\| inner membrane protease [Saccharomyces cerevisiae RM11-1a]	4.0E-50	[1..190]	[1..190]
gi\|17230467, gi\|... - gi\|17230467\|ref\|NP_487015.1\| hypothetical protein alr2975 [Nostoc sp. PCC 7120], gi\|17132069\|dbj\|BAB... gi\|25327710 - pir\|\|AH2177 hypothetical protein alr2975 [imported] - Nostoc sp. (strain PCC 7120)	5.0E-45	[7..167]	[19..189]
LEP2_SYNY3 - Probable signal peptidase I-2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=lepB2 PE=3 SV=1 gi\|7470864 - pir\|\|S75269 signal peptidase I (EC 3.4.21.89) slr1377 - Synechocystis sp. (strain PCC 6803) LEP2_SYNY3 - Probable signal peptidase I-2 OS=Synechocystis sp. (strain ATCC 27184 / PCC 6803 / N-1) GN=lepB2 PE=...	7.0E-43	[3..166]	[15..186]
gi\|153830871, gi... - gi\|153830871\|ref\|ZP_01983538.1\| signal peptidase I [Vibrio cholerae 623-39], gi\|148873640\|gb\|EDL7177... gi\|197751009, gi... - gi\|254291662\|ref\|ZP_04962450.1\| signal peptidase I [Vibrio cholerae AM-19226], gi\|197751009\|ref\|YP_0... gi\|15642458, gi\|... - gi\|9657040\|gb\|AAF95604.1\| signal peptidase I [Vibrio cholerae O1 biovar El Tor str. N16961], gi\|1564... gi\|11265841 - pir\|\|C82073 signal peptidase I (EC 3.4.21.89) VC2462 [similarity] [similarity] - Vibrio cholerae (st... gi\|75829323, gi\|... - gi\|75829323\|ref\|ZP_00758630.1\| COG0681: Signal peptidase I [Vibrio cholerae MO10], gi\|254849587\|ref\|... gi\|227014354, gi... - gi\|75827726\|ref\|ZP_00757161.1\| COG0681: Signal peptidase I [Vibrio cholerae O395], gi\|227118904\|ref\|... gi\|121728967, gi... - gi\|75815093\|ref\|ZP_00745620.1\| COG0681: Signal peptidase I [Vibrio cholerae V52], gi\|121728967\|ref\|Z... gi\|229369638, gi... - gi\|229606983\|ref\|YP_002877631.1\| signal peptidase I [Vibrio cholerae MJ-1236], gi\|229369638\|gb\|ACQ60... gi\|229519463, gi... - gi\|229519463\|ref\|ZP_04408906.1\| signal peptidase I [Vibrio cholerae RC9], gi\|229344152\|gb\|EEO09127.1... gi\|229507478, gi... - gi\|229507478\|ref\|ZP_04396983.1\| signal peptidase I [Vibrio cholerae BX 330286], gi\|229354983\|gb\|EEO1... gi\|227010471, gi... - gi\|227082583\|ref\|YP_002811134.1\| signal peptidase I [Vibrio cholerae M66-2], gi\|227010471\|gb\|ACP0668... gi\|121547155, gi... - gi\|121590978\|ref\|ZP_01678297.1\| signal peptidase I [Vibrio cholerae 2740-80], gi\|121547155\|gb\|EAX572... gi\|153222445, gi... - gi\|153222445\|ref\|ZP_01953179.1\| signal peptidase I [Vibrio cholerae MAK 757], gi\|124118882\|gb\|EAY376... gi\|126509386, gi... - gi\|153820074\|ref\|ZP_01972741.1\| signal peptidase I [Vibrio cholerae NCTC 8457], gi\|126509386\|gb\|EAZ7... gi\|229512327, gi... - gi\|229512327\|ref\|ZP_04401806.1\| signal peptidase I [Vibrio cholerae B33], gi\|229352292\|gb\|EEO17233.1...	1.0E-41	[7..184]	[57..292]
LEP_PHOLA - Signal peptidase I OS=Phormidium laminosum GN=lepB PE=3 SV=1	4.0E-40	[9..166]	[28..195]
LEPT_BACSU - Signal peptidase I T OS=Bacillus subtilis GN=sipT PE=1 SV=1 LEPT_BACSU - Signal peptidase I T OS=Bacillus subtilis (strain 168) GN=sipT PE=1 SV=1 gi\|221322833 - gi\|221322833\|ref\|ZP_03604127.1\| type I signal peptidase [Bacillus subtilis subsp. subtilis str. SMY] gi\|221318560 - gi\|221318560\|ref\|ZP_03599854.1\| type I signal peptidase [Bacillus subtilis subsp. subtilis str. JH64... gi\|221313637 - gi\|221313637\|ref\|ZP_03595442.1\| type I signal peptidase [Bacillus subtilis subsp. subtilis str. NCIB...	2.0E-39	[9..163]	[20..187]
gi\|4056468, gi\|2... - gi\|4056468\|gb\|AAC98041.1\| Contains similarity to gb\|X66426 polygalacturonase from Persea americana a...	4.0E-39	[7..159]	[14..156]
gi\|52003252, gi\|... - gi\|52785416\|ref\|YP_091245.1\| SipT [Bacillus licheniformis ATCC 14580], gi\|52347918\|gb\|AAU40552.1\| Si... LEP_BACLI - Signal peptidase I OS=Bacillus licheniformis GN=lepB PE=3 SV=1	2.0E-38	[5..163]	[9..180]
gi\|15888376, gi\|... - gi\|17934941\|ref\|NP_531731.1\| prokaryotic type I signal peptidase [Agrobacterium tumefaciens str. C58... gi\|25290024, gi\|... - pir\|\|AI2703 prokaryotic type I signal peptidase [imported] - Agrobacterium tumefaciens (strain C58, ...	2.0E-38	[9..184]	[12..241]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVGTLPIWS KTFSYAIRSL CFLHIIHMYA YEFTETRGES MLPTLSATND YVHVLKNFQN  60
   61 GRGIKMGDCI VALKPTDPNH RICKRVTGMP GDLVLVDPST IVNY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	1b12A_
Description:	Type 1 signal peptidase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [105-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VGDVLVDEER FGTYIKVPEG HVWVTGDNLS HSLDSRTYNA LPMGLIMGKI VAANNFDKPF  60
   61 WDGSIRNIWG FKWINNTFLD VQAKSN

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	12.95
Match:	1kn9A
Description:	Type 1 signal peptidase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits