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View Structure Prediction Details

Protein: SWP1
Organism: Saccharomyces cerevisiae
Length: 286 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SWP1.

Description E-value Query
Range
Subject
Range
SWP1 - Delta subunit of the oligosaccharyl transferase glycoprotein complex, which is required for N-linked...
OSTD_YEAST - Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit SWP1 OS=Saccharomyces cerevis...
0.0 [1..286] [1..286]

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Predicted Domain #1
Region A:
Residues: [1-286]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFFKTLAAL VSCISFVLAY VAQDVHVSFP STAGKSRVMI GKVEPRIGID ETVPTTITVE  60
   61 DPNEVIQVNF AIESTNKPFQ NTLLIGLPNK NLEMAFEPEI KDNGKLSMYK YRIDLAKLDA 120
  121 ALLQEASRSP EPIKATLILA SSTAKPKENL FREILQLNLN FDVDHSDSSL VDKFGIKPEI 180
  181 HHIFHAEPKR VAKPIAVIFV LIIFITILSL IVTWLNSCAA AFNNIPTGVT AVYFLGFIAT 240
  241 IVGFEVIFAR YYLGTSIFET LFSSLYLGAP GLLTSTKFLR SFGQTI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle