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View Structure Prediction Details

Protein: YMR144W
Organism: Saccharomyces cerevisiae
Length: 342 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR144W.

Description E-value Query
Range
Subject
Range
gi|190408370 - gi|190408370|gb|EDV11635.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
YMR144W - Putative protein of unknown function; localized to the nucleus; YMR144W is not an essential gene
YM22_YEAST - Uncharacterized protein YMR144W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR144W ...
0.0 [1..342] [1..342]

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Predicted Domain #1
Region A:
Residues: [1-342]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEENKLSGNK PIQLATWSNQ MGSPENNGNN ANNGSDVQNV IQKALGLIRQ LNNNGLMSPM  60
   61 EEEHSQPSSS QETLSVDREI NEQGRLRLLM QAKDDNTRKE VGTYSSPMDS AYARENMLNV 120
  121 LQSLVTHLNQ AVSQIQQLKF KNMILTSNEN NIQSRHEVED NLQKQQFERM KCQFLLERQS 180
  181 LKDQLRKREN KIVKYKQKII EKNKKLNNLA KVLNQHAISD TSQIDSFSSS VKKTPSSTTT 240
  241 PQEMKSDMLN TLGILATHVL KDEIDDDSGN QTILQLAAGS ISNDCNTTEL EITCSPEMGR 300
  301 TITHNRPNTK DESIQDSHGN RTLQLPKMKS FSTIDGSIKD IK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-342]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YSSPMDSAYA RENMLNVLQS LVTHLNQAVS QIQQLKFKNM ILTSNENNIQ SRHEVEDNLQ  60
   61 KQQFERMKCQ FLLERQSLKD QLRKRENKIV KYKQKIIEKN KKLNNLAKVL NQHAISDTSQ 120
  121 IDSFSSSVKK TPSSTTTPQE MKSDMLNTLG ILATHVLKDE IDDDSGNQTI LQLAAGSISN 180
  181 DCNTTELEIT CSPEMGRTIT HNRPNTKDES IQDSHGNRTL QLPKMKSFST IDGSIKDIK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle