YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL13B
Organism:	Saccharomyces cerevisiae
Length:	199 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL13B.

Description	E-value	Query Range	Subject Range
gi\|126631288, gi... - gi\|147900871\|ref\|NP_001091406.1\| hypothetical protein LOC100049095 [Xenopus laevis], gi\|126631288\|gb... RL13_MOUSE - 60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=1 SV=3	7.0E-66	[1..199]	[1..211]
gi\|13592055, gi\|... - gi\|510552\|emb\|CAA55130.1\| ribosomal protein L13 [Rattus norvegicus], gi\|13592055\|ref\|NP_112363.1\| ri...	2.0E-65	[1..199]	[1..211]
gi\|123995921, gi... - gi\|60656421\|gb\|AAX32774.1\| ribosomal protein L13 [synthetic construct], gi\|123995921\|gb\|ABM85562.1\| ... RPL13 - ribosomal protein L13	1.0E-64	[1..199]	[1..211]
RL13_CRIGR - 60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3	3.0E-64	[1..199]	[1..211]
RL13_CHICK - 60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2	6.0E-64	[1..199]	[1..211]
gi\|7248415, gi\|2... - gi\|7248415\|dbj\|BAA92738.1\| putative 60S ribosomal protein L13E [Oryza sativa Japonica Group], gi\|348... gi\|149391053, gi... - gi\|149391053\|gb\|ABR25544.1\| 60S ribosomal protein l13-2 [Oryza sativa (indica cultivar-group)], gi\|1...	1.0E-62	[3..186]	[2..198]
RL13_ICTPU - 60S ribosomal protein L13 OS=Ictalurus punctatus GN=rpl13 PE=2 SV=3	1.0E-62	[1..199]	[1..211]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAISKNLPIL KNHFRKHWQE RVKVHFDQAG KKVSRRNARA ARAAKIAPRP LDLLRPVVRA  60
   61 PTVKYNRKVR AGRGFTLAEV KAAGLTAAYA RTIGIAVDHR RQNRNQEIFD ANVQRLKEYQ 120
  121 SKIIVFPRDG KAPEAEQVLS AAATFPIAQP ATDVEARAVQ DNGESAFRTL RLARSEKKFR 180
  181 GIREKRAREK AEAEAEKKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	120.244125
Match:	PF01294
Description:	Ribosomal protein L13e

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits