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View Structure Prediction Details

Protein: YMR130W
Organism: Saccharomyces cerevisiae
Length: 302 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR130W.

Description E-value Query
Range
Subject
Range
YM14_YEAST - Uncharacterized protein YMR130W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR130W ...
YMR130W - Putative protein of unknown function; YMR130W is not an essential gene
9.0E-60 [1..302] [1..302]
gi|75516147, gi|... - gi|75516147|ref|ZP_00738265.1| COG0546: Predicted phosphatases [Escherichia coli 53638], gi|18849334...
gi|157162861, gi... - gi|75197316|ref|ZP_00707386.1| COG0546: Predicted phosphatases [Escherichia coli HS], gi|157162861|r...
gi|226839055, gi... - gi|254038549|ref|ZP_04872605.1| phosphoglycolate phosphatase [Escherichia sp. 1_1_43], gi|226839055|...
gi|209756690, gi... - pir||C91157 phosphoglycolate phosphatase [imported] - Escherichia coli (strain O157:H7, substrain R...
gi|254795299, gi... - gi|254795299|ref|YP_003080136.1| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. TW14359...
gi|209397865, gi... - gi|209397865|ref|YP_002272819.1| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4115]...
gi|15803888, gi|... - gi|15803888|ref|NP_289924.1| phosphoglycolate phosphatase [Escherichia coli O157:H7 EDL933], gi|1251...
gi|208741353, gi... - gi|208821230|ref|ZP_03261550.1| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4042],...
gi|217325172, gi... - gi|217325172|ref|ZP_03441256.1| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. TW14588]...
gi|124500814, gi... - gi|124528159|ref|ZP_01699492.1| phosphoglycolate phosphatase [Escherichia coli B], gi|124500814|gb|E...
gi|168779465, gi... - gi|189002264|gb|EDU71250.1| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4076], gi|...
gi|168772727, gi... - gi|187771456|gb|EDU35300.1| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4196], gi|...
gi|168797152, gi... - gi|189380127|gb|EDU98543.1| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC508], gi|1...
gi|168785186, gi... - gi|189374428|gb|EDU92844.1| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC869], gi|1...
gi|195934873 - gi|195934873|ref|ZP_03080255.1| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4024]
GPH_ECO57 - Phosphoglycolate phosphatase OS=Escherichia coli O157:H7 GN=gph PE=3 SV=1
gi|15833481, gi|... - gi|15833481|ref|NP_312254.1| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. Sakai], gi|...
gi|170018379, gi... - gi|170018379|ref|YP_001723333.1| phosphoglycolate phosphatase [Escherichia coli ATCC 8739], gi|16975...
gi|208814054, gi... - gi|208814054|ref|ZP_03255383.1| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4045],...
gi|208727293, gi... - gi|208807492|ref|ZP_03249829.1| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4206],...
gi|189359166, gi... - gi|189359166|gb|EDU77585.1| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4401], gi|...
gi|168751804, gi... - gi|188014205|gb|EDU52327.1| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4113], gi|...
gi|189364353, gi... - gi|189364353|gb|EDU82772.1| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4486], gi|...
gi|168759406, gi... - gi|189369601|gb|EDU88017.1| phosphoglycolate phosphatase [Escherichia coli O157:H7 str. EC4501], gi|...
2.0E-33 [16..260] [2..239]
Y1777_PYRFU, YH7... - (Q8U040) Putative HAD-hydrolase PF1777 (EC 3.-.-.-), Uncharacterized HAD-hydrolase PF1777 OS=Pyrococ...
G3PP_PYRFU - Glyceraldehyde 3-phosphate phosphatase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 84...
2.0E-33 [18..273] [1..240]
EG11871 - phosphoglycolate phosphatase / Phosphoglycolate phosphatase; in dam operon; involved in degradation ...
gi|194421583, gi... - gi|83585104|ref|ZP_00923756.1| COG0546: Predicted phosphatases [Escherichia coli 101-1], gi|19443949...
gi|75211751, gi|... - gi|75211751|ref|ZP_00711815.1| COG0546: Predicted phosphatases [Escherichia coli B171], gi|194426923...
gi|238902476, gi... - gi|238902476|ref|YP_002928272.1| phosphoglycolate phosphatase [Escherichia coli BW2952], gi|23886204...
gi|191167879, gi... - gi|75228961|ref|ZP_00715553.1| COG0546: Predicted phosphatases [Escherichia coli B7A], gi|191167879|...
gi|251786638, gi... - gi|251786638|ref|YP_003000942.1| hypothetical protein B21_03189 [Escherichia coli BL21], gi|24237891...
gi|193061794, gi... - gi|75260326|ref|ZP_00731594.1| COG0546: Predicted phosphatases [Escherichia coli E22], gi|193061794|...
gi|253771788, gi... - gi|254290063|ref|YP_003055811.1| phosphoglycolate phosphatase [Escherichia coli BL21(DE3)], gi|25397...
gi|89110625, gi|... - gi|89110625|ref|AP_004405.1| phosphoglycolate phosphatase [Escherichia coli str. K-12 substr. W3110]...
gi|253975214, gi... - gi|254163313|ref|YP_003046421.1| phosphoglycolate phosphatase [Escherichia coli B str. REL606], gi|2...
GPH_ECOLI - Phosphoglycolate phosphatase (EC 3.1.3.18) (PGPase) (PGP) - Escherichia coli
gi|170082902, gi... - gi|170082902|ref|YP_001732222.1| phosphoglycolate phosphatase [Escherichia coli str. K-12 substr. DH...
EG11871 - phosphoglycolate phosphatase / Phosphoglycolate phosphatase; in dam operon; involved in degradation ...
2.0E-33 [17..260] [3..239]
gi|14591678, gi|... - gi|3258380|dbj|BAA31063.1| 217aa long hypothetical protein [Pyrococcus horikoshii OT3], gi|14591678|...
gi|7428124 - pir||H71208 hypothetical protein PH1936 - Pyrococcus horikoshii
6.0E-33 [21..266] [2..217]
GPH_SALTI - Phosphoglycolate phosphatase OS=Salmonella typhi GN=gph PE=3 SV=1
GPH_SALTI - Phosphoglycolate phosphatase OS=Salmonella typhi GN=gph PE=3 SV=1
gi|16762805 - gi|16762805|ref|NP_458422.1| phosphoglycolate phosphatase [Salmonella enterica subsp. enterica serov...
1.0E-32 [17..260] [3..239]
G3PP_PYRAB - Glyceraldehyde 3-phosphate phosphatase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=PYRAB05140 PE=3 ...
YB10_PYRAB - Uncharacterized HAD-hydrolase PYRAB05140 OS=Pyrococcus abyssi GN=PYRAB05140 PE=3 SV=1
2.0E-32 [21..270] [2..235]
GPH_SALTY - Phosphoglycolate phosphatase OS=Salmonella typhimurium GN=gph PE=3 SV=1
GPH_SALTY - Phosphoglycolate phosphatase OS=Salmonella typhimurium GN=gph PE=3 SV=1
gi|167994587, gi... - gi|205327601|gb|EDZ14365.1| phosphoglycolate phosphatase [Salmonella enterica subsp. enterica serova...
lcl|NC_016856.1_... - [gene=gph] [protein=phosphoglycolate phosphatase] [protein_id=YP_005239680.1] [location=complement(3...
GPH_SALTY - Phosphoglycolate phosphatase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=gph ...
3.0E-32 [16..260] [2..239]
GPH_PASMU - Phosphoglycolate phosphatase OS=Pasteurella multocida (strain Pm70) GN=gph PE=3 SV=1
GPH_PASMU - Phosphoglycolate phosphatase OS=Pasteurella multocida GN=gph PE=3 SV=1
1.0E-31 [18..261] [1..224]

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Predicted Domain #1
Region A:
Residues: [1-35]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYPKRIPIN AWSEVHRVAR PLIITFDAYN TLYAT

[Run NCBI BLAST on this sequence.]

Region B:
Residues: [118-302]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSYFVYPDLI KFLKDLKSRH PDVILGIVSN TDPIFYKLLK NIGLFETFSG HIYLSYELNL  60
   61 AKPDRAIFQY ALDDIISKQP HLLEKYTREE ILQHCFHIGD ELKNDLEGAE AAGWTGILLD 120
  121 RNDKYGFLSN SISKPMRDEY KLSIDKIDNN SINTWEANTK QTDTLQLSER KYVVSNLEVL 180
  181 EELFP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.522879
Match: 1jud__
Description: L-2-Haloacid dehalogenase, HAD
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [36-117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLPVMEQYCI VGRKYGIKAN PSTLTNNFPH VFKKLKEDYP QYGKYSGIKP EQWWSILIRN  60
   61 VFAPNEIPDE MINEILMRFE GF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.522879
Match: 1jud__
Description: L-2-Haloacid dehalogenase, HAD
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle