YRC Public Data Repository - Protein Structure Prediction

Protein:	YMR118C
Organism:	Saccharomyces cerevisiae
Length:	196 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR118C.

Description	E-value	Query Range	Subject Range
YMR118C - Protein of unknown function with similarity to succinate dehydrogenase cytochrome b subunit; YMR118C... SHH3_YEAST - Mitochondrial inner membrane protein SHH3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) G...	5.0E-52	[1..196]	[1..196]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-42	[26..194]	[6..171]
C560_CRIGR - Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Cricetulus griseus GN=SDHC PE=2 SV...	1.0E-42	[26..195]	[2..168]
C560_BOVIN - Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Bos taurus GN=SDHC PE=1 SV=2	1.0E-40	[26..195]	[2..168]
SDHC - succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa	2.0E-39	[26..195]	[2..168]
gi\|12832459, gi\|... - gi\|13384690\|ref\|NP_079597.1\| succinate dehydrogenase complex, subunit C, integral membrane protein [...	5.0E-38	[26..195]	[2..168]
sdh3 - succinate dehydrogenase (ubiquinone) cytochrome b subunit SDH3_SCHPO - Succinate dehydrogenase cytochrome B subunit, mitochondrial OS=Schizosaccharomyces pombe (strain 972...	1.0E-35	[17..194]	[11..178]

Back

Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKATIQRVTS VFGVPRASVF VPRISTPFIL HNYISNGRMD LFSKEFHNGR VSKSDLWSSN  60
   61 KEEELLVSQR KKRPISPHLT VYEPEMSWYL SSLHRISGVL LALGFYAFTI TLGVTTIMGM 120
  121 DTTFQDLNKW YHEKMPKWSQ WVAKGSAAYL FAFHFGNGIR HLIWDMGYEL TNRGVIKTGS 180
  181 IVLAGTLVLG TYLLAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	68.060481
Match:	PF01127
Description:	Succinate dehydrogenase cytochrome b subunit

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits