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View Structure Prediction Details

Protein: YMR111C
Organism: Saccharomyces cerevisiae
Length: 462 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YMR111C.

Description E-value Query
Range
Subject
Range
YMR111C - Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nucleus...
YM01_YEAST - Uncharacterized protein YMR111C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR111C ...
0.0 [1..462] [1..462]
gi|50309991, gi|... - gi|50309991|ref|XP_455009.1| unnamed protein product [Kluyveromyces lactis], gi|49644144|emb|CAH0009...
gi|12381870, gi|... - gi|49644144|emb|CAH00096.1| KLLA0E23431p [Kluyveromyces lactis], gi|12381870|dbj|BAB21245.1| KlGcr1p...
9.0E-71 [218..407] [521..713]

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Predicted Domain #1
Region A:
Residues: [1-201]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAREYNYVE GFGGYGSLDD DDSDRDSERR NHDLGQRTIT TSPTGVSRHA ALNRYMIPGR  60
   61 INPLFRPTDA AQPPIVSTST SASATEPTNR IGPGRIKETP ETNFNAFLIA QLTRMEEQNA 120
  121 NLKEEISLMK KEQELFFLEN QKKLEKGFKD INKYVEDVSA MKEVFKEVVG IMTGERIRFI 180
  181 DHTGENVTPQ EAARVGNPST S

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.332 a.7.1 Spectrin repeat
View Download 0.284 a.129.1 GroEL equatorial domain-like
View Download 0.414 a.7.4 Smac/diablo
View Download 0.253 a.24.14 FAT domain of focal adhesion kinase
View Download 0.401 a.24.1 Apolipoprotein
View Download 0.414 a.7.4 Smac/diablo
View Download 0.401 a.24.1 Apolipoprotein
View Download 0.332 a.7.1 Spectrin repeat
View Download 0.284 a.129.1 GroEL equatorial domain-like
View Download 0.253 a.24.14 FAT domain of focal adhesion kinase
View Download 0.234 c.64.1 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
View Download 0.224 a.126.1 Serum albumin-like
View Download 0.207 a.29.5 alpha-ketoacid dehydrogenase kinase, N-terminal domain

Predicted Domain #2
Region A:
Residues: [202-462]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQAHQSQSRS TNWQEYSMHA SILAGDPRIK PEPGLSDFEN GEYDGNESDE NATTRNLPLN  60
   61 NPDSVSNADD SNNQLDGTGN ENDIRNRRGC VGTSYKLNRA IQNVTDAARE YFEGLPGQPS 120
  121 VLSLERRYGS TWRRSAKERT LFTKRMTIIK RIIDIKDDPS KYGLSLPENK ISRNQAIKVV 180
  181 ENIRLGNNTF KGHHCRLSMS QLYEYFSKKM DKLEDYSLTL KRRGKPRRIF LLEEREARLS 240
  241 LQQPHSIPNS STGTPEHDQD T

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [368-462]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PENKISRNQA IKVVENIRLG NNTFKGHHCR LSMSQLYEYF SKKMDKLEDY SLTLKRRGKP  60
   61 RRIFLLEERE ARLSLQQPHS IPNSSTGTPE HDQDT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle