YRC Public Data Repository - Protein Structure Prediction

Protein:	SNZ1
Organism:	Saccharomyces cerevisiae
Length:	297 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SNZ1.

Description	E-value	Query Range	Subject Range
PDX1_HEVBR - Probable pyridoxal 5'-phosphate synthase subunit PDX1 OS=Hevea brasiliensis GN=PDX1 PE=2 SV=1	0.0	[4..291]	[21..307]
PDX1_PHAVU - Pyridoxal 5'-phosphate synthase subunit PDX1 OS=Phaseolus vulgaris GN=PDX1 PE=2 SV=1	0.0	[4..291]	[24..310]
PDX13_ARATH - Pyridoxal 5'-phosphate synthase subunit PDX1.3 OS=Arabidopsis thaliana GN=PDX13 PE=1 SV=2	0.0	[4..291]	[21..307]
PDX1_GINBI - Probable pyridoxal 5'-phosphate synthase subunit PDX1 OS=Ginkgo biloba GN=PDX1 PE=2 SV=1	0.0	[4..295]	[21..307]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[4..297]	[54..343]
PDX12_ORYSJ - Probable pyridoxal 5'-phosphate synthase subunit PDX1.2 OS=Oryza sativa subsp. japonica GN=PDX12 PE=... PDX12_ORYSA - Probable pyridoxal biosynthesis protein PDX1.2 - Oryza sativa (Rice)	0.0	[5..295]	[24..311]
gi\|190408325 - gi\|190408325\|gb\|EDV11590.1\| pyridoxal biosynthesis lyase pdxS [Saccharomyces cerevisiae RM11-1a] gi\|207342338 - gi\|207342338\|gb\|EDZ70129.1\| YMR096Wp-like protein [Saccharomyces cerevisiae AWRI1631] SNZ1 - Protein involved in vitamin B6 biosynthesis; member of a stationary phase-induced gene family; coreg... SNZ1_YEAST - Pyridoxal 5'-phosphate synthase subunit SNZ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c...	0.0	[1..297]	[1..297]
PDXS_STAA8 - Pyridoxal 5'-phosphate synthase subunit PdxS OS=Staphylococcus aureus (strain NCTC 8325) GN=pdxS PE=... PDXS_STAA9 - Pyridoxal 5'-phosphate synthase subunit PdxS OS=Staphylococcus aureus (strain JH9) GN=pdxS PE=3 SV=1 PDXS_STAA3 - Pyridoxal 5'-phosphate synthase subunit PdxS OS=Staphylococcus aureus (strain USA300) GN=pdxS PE=3 S... PDXS_STAAS - Pyridoxal 5'-phosphate synthase subunit PdxS OS=Staphylococcus aureus (strain MSSA476) GN=pdxS PE=3 ... gi\|255005312 - gi\|255005312\|ref\|ZP_05143913.2\| pyridoxal biosynthesis lyase PdxS [Staphylococcus aureus subsp. aure... gi\|253729455, gi... - gi\|253732526\|ref\|ZP_04866691.1\| pyridoxine (vitamin B6) biosynthesis protein [Staphylococcus aureus ... gi\|253731121, gi... - gi\|253731121\|ref\|ZP_04865286.1\| pyridoxine (vitamin B6) biosynthesis protein [Staphylococcus aureus ... gi\|25364956 - pir\|\|H89818 conserved hypothetical protein SA0477 [imported] - Staphylococcus aureus (strain N315) gi\|253315628 - gi\|253315628\|ref\|ZP_04838841.1\| pyridoxal biosynthesis lyase PdxS [Staphylococcus aureus subsp. aure... PDXS_STAAM - Pyridoxal 5'-phosphate synthase subunit PdxS OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN... PDXS_STAAR - Pyridoxal 5'-phosphate synthase subunit PdxS OS=Staphylococcus aureus (strain MRSA252) GN=pdxS PE=3 ... gi\|251802969, gi... - gi\|251813467\|ref\|ZP_04827940.1\| pyridoxine (vitamin B6) biosynthesis protein [Staphylococcus aureus ... PDXS_STAAN - Pyridoxal 5'-phosphate synthase subunit PdxS OS=Staphylococcus aureus (strain N315) GN=pdxS PE=1 SV=... gi\|227852255, gi... - gi\|227899492\|ref\|ZP_04017297.1\| pyridoxine biosynthesis protein [Staphylococcus aureus subsp. aureus... PDXS_STAAW - Pyridoxal 5'-phosphate synthase subunit PdxS OS=Staphylococcus aureus (strain MW2) GN=pdxS PE=3 SV=1 gi\|227246205, gi... - gi\|227557435\|ref\|ZP_03987482.1\| pyridoxine (vitamin B6) biosynthesis protein [Staphylococcus aureus ... PDXS_STAAE - Pyridoxal 5'-phosphate synthase subunit PdxS OS=Staphylococcus aureus (strain Newman) GN=pdxS PE=3 S... PDXS_STAA1 - Pyridoxal 5'-phosphate synthase subunit PdxS OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=... gi\|87160909\|ref\|... - pyridoxine biosynthesis protein [Staphylococcus aureus subsp. aureus USA300], pyridoxine biosynthesi... PDXS_STAAC - Pyridoxal 5'-phosphate synthase subunit PdxS OS=Staphylococcus aureus (strain COL) GN=pdxS PE=3 SV=1 PDXS_STAAT - Pyridoxal 5'-phosphate synthase subunit PdxS OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=p... gi\|221139591 - gi\|221139591\|ref\|ZP_03564390.1\| pyridoxine biosynthesis protein [Staphylococcus aureus subsp. aureus... gi\|221141045 - gi\|221141045\|ref\|ZP_03565538.1\| pyridoxine biosynthesis protein [Staphylococcus aureus subsp. aureus... PDXS_STAA2 - Pyridoxal 5'-phosphate synthase subunit PdxS OS=Staphylococcus aureus (strain JH1) GN=pdxS PE=3 SV=1 gi\|269202141\|ref... - pyridoxal biosynthesis lyase PdxS [Staphylococcus aureus subsp. aureus ED98]	0.0	[7..297]	[9..295]

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Predicted Domain #1

Region A:
Residues: [1-194]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGEDFKIKS GLAQMLKGGV IMDVVTPEQA KIAEKSGACA VMALESIPAD MRKSGKVCRM  60
   61 SDPKMIKDIM NSVSIPVMAK VRIGHFVEAQ IIEALEVDYI DESEVLTPAD WTHHIEKDKF 120
  121 KVPFVCGAKD LGEALRRINE GAAMIRTKGE AGTGDVSEAV KHIRRITEEI KACQQLKSED 180
  181 DIAKVAEEMR VPVS

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.54
Match:	1pymA
Description:	Phosphoenolpyruvate mutase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [195-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLKDVLEKGK LPVVNFAAGG VATPADAALL MQLGCDGVFV GSGIFKSSNP VRLATAVVEA  60
   61 TTHFDNPSKL LEVSSDLGEL MGGVSIESIS HASNGVRLSE IGW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	2.69897
Match:	2tpsA_
Description:	Thiamin phosphate synthase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits