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View Structure Prediction Details

Protein: CTF13
Organism: Saccharomyces cerevisiae
Length: 478 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CTF13.

Description E-value Query
Range
Subject
Range
CBF3C_YEAST - Centromere DNA-binding protein complex CBF3 subunit C OS=Saccharomyces cerevisiae (strain ATCC 20450...
CTF13 - Subunit of the CBF3 complex, which binds to the CDE III element of centromeres, bending the DNA upon...
0.0 [1..478] [1..478]

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Predicted Domain #1
Region A:
Residues: [1-292]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSFNPVRFL ELPIDIRKEV YFHLDGNFCG AHPYPIDILY KSNDVELPGK PSYKRSKRSK  60
   61 KLLRYMYPVF ATYLNIFEYS PQLIEKWLEY AFWLRYDCLV LDCFKVNHLY DGTLIDALEW 120
  121 TYLDNELRLA YFNKASMLEV WYTFKEYKKW VIDSVAFDEL DLLNVSNIQF NIDNLTPQLV 180
  181 DKCLSILEQK DLFATIGEVQ FGQDEEVGEE KDVDVSGANS DENSSPSSTI KNKKRSASKR 240
  241 SHSDNGNVGA THNQLTSISV IRTIRSMESM KSLRKITVRG EKLYELLINF HG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [293-478]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FRDNPGKTIS YIVKRRINEI RLSRMNQISR TGLADFTRWD NLQKLVLSRV AYIDLNSIVF  60
   61 PKNFKSLTMK RVSKIKWWNI EENILKELKV DKRTFKSLYI KEDDSKFTKF FNLRHTRIKE 120
  121 LDKSEINQIT YLRCQAIVWL SFRTLNHIKL QNVSEVFNNI IVPRALFDSK RVEIYRCEKI 180
  181 SQVLVI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle