| Protein: | RCO1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 684 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RCO1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..684] | [1..684] |
|
|
2.0E-72 | [7..573] | [25..540] |
|
|
5.0E-55 | [72..391] | [63..422] |
|
|
2.0E-54 | [72..391] | [98..457] |
|
|
1.0E-53 | [72..391] | [98..457] |
|
Region A: Residues: [1-215] |
1 11 21 31 41 51
| | | | | |
1 MDTSKKDTTR SPSHSNSSSP SSSSLSSSSS KEKKRPKRLS SQNVNYDLKR RKIITSEGIE 60
61 RSFKNEHSNL AVEDNIPEEE PKELLEKDSK GNIIKLNEPS TISEDSKVSV TGLPLNKGPS 120
121 EKIKRESLWN YRKNLGGQSN NSEMTLVPSK RFTQVPKNFQ DLNRNDLKTF LTENMTEESN 180
181 IRSTIGWNGD IINRTRDREP ESDRDNKKLS NIRTK
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [216-311] |
1 11 21 31 41 51
| | | | | |
1 IILSTNATYD SKSKLFGQNS IKSTSNASEK IFRDKNNSTI DFENEDFCSA CNQSGSFLCC 60
61 DTCPKSFHFL CLDPPIDPNN LPKGDWHCNE CKFKIF
|
| Detection Method: | |
| Confidence: | 8.30103 |
| Match: | 1fp0A_ |
| Description: | Nuclear corepressor KAP-1 (TIF-1beta) |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [312-422] |
1 11 21 31 41 51
| | | | | |
1 INNSMATLKK IESNFIKQNN NVKIFAKLLF NIDSHNPKQF QLPNYIKETF PAVKTGSRGQ 60
61 YSDENDKIPL TDRQLFNTSY GQSITKLDSY NPDTHIDSNS GKFLICYKCN Q
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.247 | a.118.8 | TPR-like |
| View | Download | 0.239 | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.267 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.302 | d.53.1 | Ribosomal protein S3 C-terminal domain |
| View | Download | 0.265 | c.49.1 | Pyruvate kinase, C-terminal domain |
| View | Download | 0.229 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.221 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.209 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.208 | a.118.9 | ENTH/VHS domain |
| View | Download | 0.203 | d.53.1 | Ribosomal protein S3 C-terminal domain |
| View | Download | 0.202 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
|
Region A: Residues: [423-484] |
1 11 21 31 41 51
| | | | | |
1 TRLGSWSHPE NSRLIMTCDY CQTPWHLDCV PRASFKNLGS KWKCPLHSPT KVYKKIHHCQ 60
61 ED
|
| Detection Method: | |
| Confidence: | 51.94696 |
| Match: | 1f62A_ |
| Description: | Williams-Beuren syndrome transcription factor, WSTF |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [485-684] |
1 11 21 31 41 51
| | | | | |
1 NSVNYKVWKK QRLINKKNQL YYEPLQKIGY QNNGNIQIIP TTSHTDYDFN QDFKITQIDE 60
61 NSIKYDFFDK IYKSKMVQKR KLFQFQESLI DKLVSNGSQN GNSEDNMVKD IASLIYFQVS 120
121 NNDKSSNNKS ASKSNNLRKL WDLKELTNVV VPNELDSIQF NDFSSDEIKH LLYLKKIIES 180
181 KPKEELLKFL NIENPENQSE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
