| Protein: | RIM9 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 239 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIM9.
| Description | E-value | Query Range |
Subject Range |
|
|
9.0E-85 | [1..239] | [1..239] |
|
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5.0E-60 | [8..229] | [9..227] |
|
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4.0E-49 | [3..206] | [5..202] |
|
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4.0E-39 | [6..178] | [50..250] |
|
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4.0E-38 | [6..178] | [9..209] |
|
|
1.0E-16 | [8..101] | [10..92] |
|
Region A: Residues: [1-116] |
1 11 21 31 41 51
| | | | | |
1 MVSMIHIVVF LLAITTMFEI LPLITVPVTK YLSLSSFRNH YYGLFGWCVR GQNQELMCTK 60
61 MKIGYDSTDV DSSGHVLTLP SNSKVVVSNL LVVHPISLAF TGTLLILAVI IMVTPL
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.633 | 0.060 | ascospore formation | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.674 | 0.055 | ascospore formation | a.47.2 | t-snare proteins |
| View | Download | 0.522 | 0.050 | ascospore formation | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.461 | 0.019 | ascospore formation | d.201.1 | SRP19 |
| View | Download | 0.464 | 0.006 | ascospore formation | a.60.10 | Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain |
| View | Download | 0.460 | N/A | N/A | d.58.44 | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains |
| View | Download | 0.409 | N/A | N/A | a.73.1 | Retrovirus capsid protein, N-terminal core domain |
| View | Download | 0.381 | N/A | N/A | d.129.3 | Bet v1-like |
| View | Download | 0.379 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.376 | N/A | N/A | b.55.1 | PH domain-like |
| View | Download | 0.355 | N/A | N/A | c.23.12 | Formate/glycerate dehydrogenase catalytic domain-like |
| View | Download | 0.349 | N/A | N/A | d.130.1 | S-adenosylmethionine synthetase |
| View | Download | 0.334 | N/A | N/A | c.23.5 | Flavoproteins |
| View | Download | 0.332 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.319 | N/A | N/A | c.30.1 | PreATP-grasp domain |
| View | Download | 0.318 | N/A | N/A | a.4.12 | TrpR-like |
| View | Download | 0.307 | N/A | N/A | a.26.1 | 4-helical cytokines |
| View | Download | 0.299 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.288 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.288 | N/A | N/A | c.23.1 | CheY-like |
| View | Download | 0.268 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.263 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.258 | N/A | N/A | f.14.1 | Voltage-gated potassium channels |
| View | Download | 0.251 | N/A | N/A | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.248 | N/A | N/A | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.242 | N/A | N/A | a.24.11 | Bacterial GAP domain |
| View | Download | 0.237 | N/A | N/A | c.16.1 | Lumazine synthase |
| View | Download | 0.223 | N/A | N/A | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.219 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.218 | N/A | N/A | d.38.1 | Thioesterase/thiol ester dehydrase-isomerase |
| View | Download | 0.209 | N/A | N/A | a.41.1 | Domain of poly(ADP-ribose) polymerase |
| View | Download | 0.206 | N/A | N/A | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.203 | N/A | N/A | d.58.22 | TRADD, N-terminal domain |
| View | Download | 0.202 | N/A | N/A | a.25.1 | Ferritin-like |
|
Region A: Residues: [117-239] |
1 11 21 31 41 51
| | | | | |
1 GDSPEMLLFT ALFSLPTFML CLLCFLVDIL LFISKLDWPG WLMLAATISV ALCCSMLWVM 60
61 RRVVSVKKYE SQQSIAHACS MEQYSISDIY QSKQNGNSSE YEVAPTHTDS LIAPEVTYRG 120
121 FIE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
