YRC Public Data Repository - Protein Structure Prediction

Protein:	AAC1
Organism:	Saccharomyces cerevisiae
Length:	309 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AAC1.

Description	E-value	Query Range	Subject Range
gi\|151946215 - gi\|151946215\|gb\|EDN64446.1\| ADP/ATP carrier [Saccharomyces cerevisiae YJM789] AAC1 - Mitochondrial inner membrane ADP/ATP translocator, exchanges cytosolic ADP for mitochondrially synth... ADT1_YEAST - ADP,ATP carrier protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AAC1 PE=1 SV=1	2.0E-90	[1..309]	[1..309]
ADT3_BOVIN - ADP/ATP translocase 3 OS=Bos taurus GN=SLC25A6 PE=1 SV=3	7.0E-90	[8..301]	[3..296]
ADT_NEUCR - ADP,ATP carrier protein OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257... ADT_NEUCR - ADP,ATP carrier protein OS=Neurospora crassa GN=acp PE=3 SV=1	1.0E-89	[1..309]	[1..309]
gi\|90085585 - gi\|90085585\|dbj\|BAE91533.1\| unnamed protein product [Macaca fascicularis] SLC25A6 - solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6	2.0E-89	[8..301]	[3..296]
ADT1_MOUSE - ADP/ATP translocase 1 OS=Mus musculus GN=Slc25a4 PE=1 SV=4	7.0E-89	[7..302]	[2..297]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	1.0E-88	[7..302]	[2..297]

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Predicted Domain #1

Region A:
Residues: [1-309]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHTETQTQQ SHFGVDFLMG GVSAAIAKTG AAPIERVKLL MQNQEEMLKQ GSLDTRYKGI  60
   61 LDCFKRTATH EGIVSFWRGN TANVLRYFPT QALNFAFKDK IKSLLSYDRE RDGYAKWFAG 120
  121 NLFSGGAAGG LSLLFVYSLD YARTRLAADA RGSKSTSQRQ FNGLLDVYKK TLKTDGLLGL 180
  181 YRGFVPSVLG IIVYRGLYFG LYDSFKPVLL TGALEGSFVA SFLLGWVITM GASTASYPLD 240
  241 TVRRRMMMTS GQTIKYDGAL DCLRKIVQKE GAYSLFKGCG ANIFRGVAAA GVISLYDQLQ 300
  301 LIMFGKKFK

[Run NCBI BLAST on this sequence.]

Detection Method:	ORFEUS
Confidence:	7.3
Match:	1is2A
Description:	Peroxisomal acyl-CoA oxidase-II, domains 3 and 4; Peroxisomal acyl-CoA oxidase-II, domains 1 and 2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits