Protein: | ERB1 |
Organism: | Saccharomyces cerevisiae |
Length: | 807 amino acids |
Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERB1.
Description | E-value | Query Range |
Subject Range |
|
661.0 | [0..108] | [806..28] |
|
653.0 | [0..11] | [806..13] |
Region A: Residues: [1-308] |
1 11 21 31 41 51 | | | | | | 1 MMAKNNKTTE AKMSKKRAAS EESDVEEDED KLLSVDGLID AEASESDEDD DEYESAVEEK 60 61 ESSSDKEAQD DSDDDSDAEL NKLLAEEEGD GEEDYDSSEF SDDTTSLTDR LSGVKLQTIV 120 121 DPNIYSKYAD GSDRIIKPEI NPVYDSDDSD AETQNTIGNI PLSAYDEMPH IGYDINGKRI 180 181 MRPAKGSALD QLLDSIELPE GWTGLLDKNS GSSLNLTKEE LELISKIQRN EQTDDSINPY 240 241 EPLIDWFTRH EEVMPLTAVP EPKRRFVPSK NEAKRVMKIV RAIREGRIIP PKKLKEMKEK 300 301 EKIENYQY |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [309-368] |
1 11 21 31 41 51 | | | | | | 1 DLWGDSTETN DHVMHLRAPK LPPPTNEESY NPPEEYLLSP EEKEAWENTE YSERERNFIP 60 61 |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.672 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
View | Download | 0.425 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
View | Download | 0.419 | a.50.1 | Anaphylotoxins (complement system) |
View | Download | 0.406 | a.60.4 | DNA repair protein Rad51, N-terminal domain |
View | Download | 0.382 | a.60.1 | SAM/Pointed domain |
View | Download | 0.337 | a.60.3 | C-terminal domain of RNA polymerase alpha subunit |
View | Download | 0.332 | a.60.1 | SAM/Pointed domain |
Region A: Residues: [369-751] |
1 11 21 31 41 51 | | | | | | 1 QKYSALRKVP GYGESIRERF ERSLDLYLAP RVRKNKLNID PNSLIPELPS PKDLRPFPIR 60 61 CSTIYAGHKG KVRTLSIDPS GLWLATGSDD GTVRVWEILT GREVYRTTLI DDEENPDYHI 120 121 ECIEWNPDAN NGILAVAVGE NIHLIVPPIF GYDIENNGKT KIEDGFGYDT FGTVKKSNLE 180 181 VNENGDGDED GENESAKNAV KKQVAQWNKP SQKQLEKDIC ITISCKKTVK KLSWHRKGDY 240 241 FVTVQPDSGN TSVLIHQVSK HLTQSPFKKS KGIIMDAKFH PFKPQLFVCS QRYVRIYDLS 300 301 QQILVKKLLP GARWLSKIDI HPRGDNLIAS SFDKRVLWHD LDLASTPYKT LRYHEKAVRS 360 361 VNFHKKLPLF SSAADDGTIH VFH |
Detection Method: | |
Confidence: | 72.69897 |
Match: | 1gg2B |
Description: | beta1-subunit of the signal-transducing G protein heterotrimer |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [752-807] |
1 11 21 31 41 51 | | | | | | 1 ATVYDDMMKN PMIVPLKKLT GHKVINSLGV LDAIWHPREA WLFSAGADNT ARLWTT |
Detection Method: | |
Confidence: | 59.69897 |
Match: | 1erjA |
Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |