| Protein: | FAR8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 523 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FAR8.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..523] | [1..523] |
|
|
6.0E-33 | [12..198] | [22..262] |
|
|
6.0E-21 | [11..71] | [77..137] |
|
|
6.0E-21 | [11..71] | [62..122] |
|
|
1.0E-19 | [11..71] | [62..122] |
|
Region A: Residues: [1-120] |
1 11 21 31 41 51
| | | | | |
1 MAINQAHVHP HYTLPGVMHY LQTEFTKNER DRITWELERS EMKARIAELE GENRDLKHQL 60
61 NQIQSKAVSP EGEKEEKHVP DSLLQSKLAV QENVKEIIYL LKGPNTVNQL ESLNSREAGS 120
121
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.782 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.782 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.689 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.619 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.619 | N/A | N/A | a.24.4 | Hemerythrin |
| View | Download | 0.607 | N/A | N/A | a.47.2 | t-snare proteins |
| View | Download | 0.530 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.530 | N/A | N/A | a.29.3 | Acyl-CoA dehydrogenase C-terminal domain-like |
| View | Download | 0.485 | N/A | N/A | a.7.2 | Enzyme IIa from lactose specific PTS, IIa-lac |
| View | Download | 0.390 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.380 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.365 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.333 | N/A | N/A | f.32.1 | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) |
| View | Download | 0.311 | N/A | N/A | a.2.11 | Fe,Mn superoxide dismutase (SOD), N-terminal domain |
| View | Download | 0.298 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.294 | N/A | N/A | a.48.1 | N-terminal domain of cbl (N-cbl) |
| View | Download | 0.262 | N/A | N/A | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.259 | N/A | N/A | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.248 | N/A | N/A | a.7.4 | Smac/diablo |
| View | Download | 0.245 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.234 | N/A | N/A | f.13.1 | Family A G protein-coupled receptor-like |
| View | Download | 0.232 | N/A | N/A | a.25.1 | Ferritin-like |
| View | Download | 0.230 | N/A | N/A | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| View | Download | 0.227 | N/A | N/A | a.24.11 | Bacterial GAP domain |
| View | Download | 0.227 | N/A | N/A | a.7.1 | Spectrin repeat |
| View | Download | 0.227 | N/A | N/A | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.226 | N/A | N/A | a.60.8 | HRDC-like |
| View | Download | 0.216 | N/A | N/A | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.214 | N/A | N/A | f.36.1 | Neurotransmitter-gated ion-channel pransmembrane pore |
| View | Download | 0.211 | N/A | N/A | a.126.1 | Serum albumin-like |
| View | Download | 0.210 | N/A | N/A | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.204 | N/A | N/A | a.74.1 | Cyclin-like |
|
Region A: Residues: [121-523] |
1 11 21 31 41 51
| | | | | |
1 ELHDLEKLNV NTPKEEGSAK TNGMDILNNA LLDTKPNPKQ GPSESPSPTK VKSLFSTANK 60
61 RENNETISKI HSELSKVDII SSYGDCMALY DADTKSLEIH QVDANLNSKL LKKISLGQDS 120
121 DIMKFFWVST SKLLVIEKSF HLKLFSISSA SLISDVDLLQ DSEQPFSSSD IINIDFKNKW 180
181 LLIASKNKSQ IRIWELDNIE APEDVPINIK ETYEITHDND DDDSNDSTNI LDCILGITEK 240
241 SLILLSSNPY QLTIYDFEGK LLQKIDLKID TILSGKPEEE GYHLFLDRKT SKLLIQLSNE 300
301 RLLVYSFDKK KVVLKEQLTP SSTLPIQLDL NDSIITVSYS NGDFEFRNLE NLKPSIDEFV 360
361 VADINFSERK EPVVFSSNLI VDSTPVLITV NKNNEVLLHK IKI
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [203-523] |
1 11 21 31 41 51
| | | | | |
1 YGDCMALYDA DTKSLEIHQV DANLNSKLLK KISLGQDSDI MKFFWVSTSK LLVIEKSFHL 60
61 KLFSISSASL ISDVDLLQDS EQPFSSSDII NIDFKNKWLL IASKNKSQIR IWELDNIEAP 120
121 EDVPINIKET YEITHDNDDD DSNDSTNILD CILGITEKSL ILLSSNPYQL TIYDFEGKLL 180
181 QKIDLKIDTI LSGKPEEEGY HLFLDRKTSK LLIQLSNERL LVYSFDKKKV VLKEQLTPSS 240
241 TLPIQLDLND SIITVSYSNG DFEFRNLENL KPSIDEFVVA DINFSERKEP VVFSSNLIVD 300
301 STPVLITVNK NNEVLLHKIK I
|
| Detection Method: | |
| Confidence: | 5.06 |
| Match: | 1erjA |
| Description: | Tup1, C-terminal domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.92860449017551 | bayes_pls_golite062009 |
| protein binding | 0.637100766251496 | bayes_pls_golite062009 |
