YRC Public Data Repository - Protein Structure Prediction

Protein:	MIC17
Organism:	Saccharomyces cerevisiae
Length:	156 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MIC17.

Description	E-value	Query Range	Subject Range
gi\|46810303, gi\|... - gi\|46810303\|ref\|NP_898911.1\| hypothetical protein LOC71970 [Mus musculus], gi\|26369695\|dbj\|BAC25301....	200.0	[0..2]	[152..5]
gi\|109497259, gi... - gi\|157786908\|ref\|NP_001099394.1\| SCAN domain containing 3 [Rattus norvegicus], gi\|149063159\|gb\|EDM13...	197.0	[0..2]	[152..5]
gi\|109130246 - gi\|109130246\|ref\|XP_001089355.1\| PREDICTED: similar to transcription factor (p38 interacting protein...	158.0	[0..6]	[152..886]
gi\|114649208, gi... - gi\|114649212\|ref\|XP_001136548.1\| PREDICTED: similar to CHCHD2 protein isoform 2 [Pan troglodytes], g...	153.0	[0..10]	[154..2]
gi\|114613531, gi... - gi\|114613531\|ref\|XP_001161277.1\| PREDICTED: similar to 16.7Kd protein isoform 3 [Pan troglodytes], g... CHCHD2 - coiled-coil-helix-coiled-coil-helix domain containing 2 gi\|190690573, gi... - gi\|190691935\|gb\|ACE87742.1\| coiled-coil-helix-coiled-coil-helix domain containing 2 protein [synthet...	147.0	[0..4]	[152..2]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSRGSSRP ISRSRPTQTR SASTMAAPVH PQQQQQPNAY SHPPAAGAQT RQPGMFAQMA  60
   61 STAAGVAVGS TIGHTLGAGI TGMFSGSGSD SAPVEQQQQN MANTSGQTQT DQQLGRTCEI 120
  121 DARNFTRCLD ENNGNFQICD YYLQQLKACQ EAARQY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.14
Match:	2i47A
Description:	No description for 2i47A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits