| Protein: | CDC5 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 705 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CDC5.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..705] | [1..705] |
|
|
0.0 | [56..678] | [1..598] |
|
|
0.0 | [35..678] | [9..628] |
|
|
0.0 | [47..678] | [1..591] |
|
|
0.0 | [1..518] | [1..514] |
|
|
0.0 | [1..541] | [1..546] |
|
|
0.0 | [60..542] | [5..486] |
|
Region A: Residues: [1-72] |
1 11 21 31 41 51
| | | | | |
1 MSLGPLKAIN DKQLNTRSKL VHTPIKGNTA DLVGKENHFK QTKRLDPNND HHHQPAQKKK 60
61 REKLSALCKT PP
|
|
Region B: Residues: [125-144] |
1 11 21 31 41 51
| | | | | |
1 KLLSEIQIHK SMSHPNIVQF
|
|
Region C: Residues: [160-368] |
1 11 21 31 41 51
| | | | | |
1 ICPNGSLMEL LKRRKVLTEP EVRFFTTQIC GAIKYMHSRR VIHRDLKLGN IFFDSNYNLK 60
61 IGDFGLAAVL ANESERKYTI CGTPNYIAPE VLMGKHSGHS FEVDIWSLGV MLYALLIGKP 120
121 PFQARDVNTI YERIKCRDFS FPRDKPISDE GKILIRDILS LDPIERPSLT EIMDYVWFRG 180
181 TFPPSIPSTV MSEAPNFEDI PEEQSLVNF
|
| Detection Method: |  |
| Confidence: | 486.0 |
| Match: | 1ctpE_ |
| Description: | cAMP-dependent PK, catalytic subunit |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [73-124] |
1 11 21 31 41 51
| | | | | |
1 SLIKTRGKDY HRGHFLGEGG FARCFQIKDD SGEIFAAKTV AKASIKSEKT RK
|
|
Region B: Residues: [145-159] |
1 11 21 31 41 51
| | | | | |
1 IDCFEDDSNV YILLE
|
|
Region C: Residues: [369-382] |
1 11 21 31 41 51
| | | | | |
1 KDCMEKSLLL ESMS
|
| Detection Method: | |
| Confidence: | 486.0 |
| Match: | 1ctpE_ |
| Description: | cAMP-dependent PK, catalytic subunit |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [383-455] |
1 11 21 31 41 51
| | | | | |
1 SDKIQRQKRD YISSIKSSID KLEEYHQNRP FLPHSLSPGG TKQKYKEVVD IEAQRRLNDL 60
61 AREARIRRAQ QAV
|
| Detection Method: | |
| Confidence: | 17.69897 |
| Match: | 1ahr__ |
| Description: | Calmodulin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [456-519] |
1 11 21 31 41 51
| | | | | |
1 LRKELIATST NVIKSEISLR ILASECHLTL NGIVEAEAQY KMGGLPKSRL PKIKHPMIVT 60
61 KWVD
|
| Detection Method: | |
| Confidence: | 17.69897 |
| Match: | 1ahr__ |
| Description: | Calmodulin |
| Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [520-602] |
1 11 21 31 41 51
| | | | | |
1 YSNKHGFSYQ LSTEDIGVLF NNGTTVLRLA DAEEFWYISY DDREGWVASH YLLSEKPREL 60
61 SRHLEVVDFF AKYMKANLSR VST
|
| Detection Method: | |
| Confidence: | 8.38 |
| Match: | 1mbyA |
| Description: | Sak kinase Polo domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [603-705] |
1 11 21 31 41 51
| | | | | |
1 FGREEYHKDD VFLRRYTRYK PFVMFELSDG TFQFNFKDHH KMAISDGGKL VTYISPSHES 60
61 TTYPLVEVLK YGEIPGYPES NFREKLTLIK EGLKQKSTIV TVD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.675 | b.55.1 | PH domain-like |
| View | Download | 0.682 | d.93.1 | SH2 domain |
| View | Download | 0.751 | d.198.1 | Type III secretory system chaperone |
| View | Download | 0.664 | d.129.1 | TATA-box binding protein-like |
| View | Download | 0.556 | d.130.1 | S-adenosylmethionine synthetase |
| View | Download | 0.549 | a.118.11 | Cytochrome c oxidase subunit E |
| View | Download | 0.534 | d.82.2 | Frataxin-like |
| View | Download | 0.522 | d.50.3 | PI-Pfui intein middle domain |
| View | Download | 0.520 | b.55.1 | PH domain-like |
| View | Download | 0.473 | d.82.1 | Copper amine oxidase, domain N |
| View | Download | 0.434 | b.76.2 | Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain |
| View | Download | 0.393 | d.197.1 | Protein-L-isoaspartyl O-methyltransferase, C-terminal domain |
| View | Download | 0.391 | b.60.1 | Lipocalins |
| View | Download | 0.374 | b.61.4 | Quinohemoprotein amine dehydrogenase A chain, domain 3 |
| View | Download | 0.367 | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.366 | d.217.1 | SAND domain-like |
| View | Download | 0.363 | c.84.1 | Phosphoglucomutase, first 3 domains |
| View | Download | 0.351 | d.95.2 | Homing endonucleases |
| View | Download | 0.326 | d.58.49 | YajQ-like |
| View | Download | 0.325 | d.58.39 | Glutamyl tRNA-reductase catalytic, N-terminal domain |
| View | Download | 0.324 | b.60.1 | Lipocalins |
| View | Download | 0.324 | a.46.1 | Methionine synthase domain |
| View | Download | 0.305 | a.7.8 | GAT domain |
| View | Download | 0.304 | d.82.2 | Frataxin-like |
| View | Download | 0.286 | b.55.1 | PH domain-like |
| View | Download | 0.284 | c.23.1 | CheY-like |
| View | Download | 0.282 | b.60.1 | Lipocalins |
| View | Download | 0.268 | b.71.1 | Glycosyl hydrolase domain |
| View | Download | 0.263 | b.60.1 | Lipocalins |
| View | Download | 0.258 | b.114.1 | N-utilization substance G protein NusG, insert domain |
| View | Download | 0.255 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.240 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.235 | a.3.1 | Cytochrome c |
| View | Download | 0.229 | d.233.1 | Inhibitor of vertebrate lysozyme, Ivy |
| View | Download | 0.203 | c.51.1 | Anticodon-binding domain of Class II aaRS |
| View | Download | 0.203 | d.175.1 | Penicillin binding protein dimerisation domain |
| View | Download | 0.200 | b.61.1 | Avidin/streptavidin |
