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View Structure Prediction Details

Protein: PGA3
Organism: Saccharomyces cerevisiae
Length: 312 amino acids
Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PGA3.

Description E-value Query
Range		 Subject
Range
NIA2_PHAVU - Nitrate reductase [NADH] 2 OS=Phaseolus vulgaris GN=NIA2 PE=3 SV=1
 6.0E-78 [27..300] [583..885]
gi|14041825 - gi|14041825|dbj|BAB55002.1| nitrate reductase [Prunus persica]
 2.0E-77 [27..297] [594..898]
gi|484212 - gi|484212|gb|AAA33712.1| nitrate reductase apoenzyme
 4.0E-77 [26..300] [610..910]
gi|207342632 - gi|207342632|gb|EDZ70344.1| YML125Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|190408123 - gi|190408123|gb|EDV11388.1| hypothetical protein SCRG_01775 [Saccharomyces cerevisiae RM11-1a]
PGA3 - Putative cytochrome b5 reductase, localized to the plasma membrane; may be involved in regulation of...
gi|151946039 - gi|151946039|gb|EDN64270.1| processing of gas1p and alp [Saccharomyces cerevisiae YJM789]
PGA3_YEAST - Plasma membrane-associated coenzyme Q6 reductase PGA3 OS=Saccharomyces cerevisiae (strain ATCC 20450...
 9.0E-77 [1..312] [1..312]
NIA2_TOBAC - Nitrate reductase [NADH] 2 OS=Nicotiana tabacum GN=NIA2 PE=2 SV=2
 1.0E-76 [26..300] [600..899]
NIA_LOTJA - Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA PE=3 SV=1
 1.0E-76 [27..300] [591..895]
gi|447739 - gi|447739|prf||1915304A nylB upstream ORF
 1.0E-76 [26..300] [600..899]
NIA_SPIOL - Nitrate reductase [NADH] OS=Spinacia oleracea GN=NIA PE=2 SV=1
 7.0E-76 [26..299] [620..920]

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Predicted Domain #1
Region A:
Residues: [1-61] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKEDIEGTN ILDEPVHGIY IPAALFVVGV AITTYMSGEL KILWSLPILF MIIFVRAYSA  60
   61 Y

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.69897
Match: 1vhbA_
Description: Bacterial dimeric hemoglobin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [62-167] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRRRSLYPDR WTSLELEDQT IISKNTALYR FKLKTRLESL DIPAGHHVAV RVPIDGKQEV  60
   61 RYYNPISSKL ESGYLDLVVK AYVDGKVSKY FAGLNSGDTV DFKGPI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 444.751666
Match: 1ib0A_
Description: cytochrome b5 reductase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [168-312] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GTLNYEPNSS KHLGIVAGGS GITPVLQILN EIITVPEDLT KVSLLYANET ENDILLKDEL  60
   61 DEMAEKYPHF QVHYVVHYPS DRWTGDVGYI TKDQMNRYLP EYSEDNRLLI CGPDGMNNLA 120
  121 LQYAKELGWK VNSTRSSGDD QVFVF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 444.751666
Match: 1ib0A_
Description: cytochrome b5 reductase
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle