YRC Public Data Repository - Protein Structure Prediction

Protein:	DAT1
Organism:	Saccharomyces cerevisiae
Length:	248 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAT1.

Description	E-value	Query Range	Subject Range
DATI_YEAST - Oligo(A)/oligo(T)-binding protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DAT1 P... DAT1 - DNA binding protein that recognizes oligo(dA).oligo(dT) tracts; Arg side chain in its N-terminal pen...	3.0E-96	[1..248]	[1..248]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKTLAQGRK PGSGRKPGKG KTLREGRKPG SGRRRRQDTG GKETDGSQQD QESRLISSRD  60
   61 MEAVDALREL THSPSSHSAH NSSAAPPPHA AAASTSLPPS LDYTHQSFMD QQQQQQQQQQ 120
  121 QQLLQQQRVD VVPPKPFITH KILLSSTGNS GGHVNSNYNA DHSINHNSNH NLNSNVNVNM 180
  181 NFTINGSNQD PSSSFLMGPY NYLQRPFIVK PYLDLSTSTA ASNQPRTQPS PAAHITKNSD 240
  241 STEKNATI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [40-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGKETDGSQQ DQESRLISSR DMEAVDALRE LTHSPSSHSA HNSSAAPPPH AAAASTSLPP  60
   61 SLDYTHQSFM DQQQQQQQQQ QQQLLQQQRV DVVPPKPFIT HKILLSSTGN SGGHVNSNYN 120
  121 ADHSINHNSN HNLNSNVNVN MNFTINGSNQ DPSSSFLMGP YNYLQRPFIV KPYLDLSTST 180
  181 AASNQPRTQP SPAAHITKNS DSTEKNATI