YRC Public Data Repository - Protein Structure Prediction

Protein:	YML108W
Organism:	Saccharomyces cerevisiae
Length:	105 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YML108W.

Description	E-value	Query Range	Subject Range
gi\|30749569 - gi\|30749569\|pdb\|1N6Z\|A Chain A, Solution Nmr Structure Of Protein Yml108w From Saccharomyces Cerevis...	187.0	[0..2]	[105..2]
gi\|44979986 - gi\|44979986\|gb\|AAS50182.1\| AAL184Wp [Ashbya gossypii ATCC 10895] gi\|44979986, gi\|... - gi\|45184640\|ref\|NP_982358.1\| AAL184Wp [Ashbya gossypii ATCC 10895], gi\|44979986\|gb\|AAS50182.1\| AAL18...	122.0	[0..1]	[104..1]
gi\|49642277 - gi\|49642277\|emb\|CAH00239.1\| KLLA0D01661p [Kluyveromyces lactis] gi\|50306339, gi\|... - gi\|50306339\|ref\|XP_453143.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642277\|emb\|CAH0023...	120.0	[0..2]	[104..3]
gi\|49527306 - gi\|49527306\|emb\|CAG60946.1\| unnamed protein product [Candida glabrata] gi\|50291125, gi\|... - gi\|50291125\|ref\|XP_447995.1\| unnamed protein product [Candida glabrata], gi\|49527306\|emb\|CAG60946.1\|...	110.0	[0..4]	[105..2]
gi\|49656604, gi\|... - gi\|50424691\|ref\|XP_460935.1\| hypothetical protein DEHA0F14267g [Debaryomyces hansenii CBS767], gi\|49... gi\|49656604 - gi\|49656604\|emb\|CAG89289.1\| DEHA2F13134p [Debaryomyces hansenii]	55.0	[0..47]	[103..44]
gi\|46435057, gi\|... - gi\|68485206\|ref\|XP_713512.1\| hypothetical protein CaO19.3887 [Candida albicans SC5314], gi\|68485127\|... orf19.11368, orf... - orf19.3887 CGDID:CAL0002183 Assembly 19, Contig19-10193 (66522, 65971) CDS, reverse complemented, tr...	50.0	[0..46]	[87..98]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKSNTYRML VLLEDDTKIN KEDEKFLKGK PGKMHEFVDE LILPFNVDEL DELNTWFDKF  60
   61 DAEICIPNEG HIKYEISSDG LIVLMLDKEI EEVVEKVKKF VEENN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.69897
Match:	1n6zA
Description:	Hypothetical protein Yml108w
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits