| Protein: | RPM2 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 1202 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPM2.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..1202] | [1..1202] |
|
|
0.0 | [1..1194] | [1..1177] |
|
Region A: Residues: [1-1202] |
1 11 21 31 41 51
| | | | | |
1 MAFKSFIYSK GYHRSAAQKK TATSFFDSSY QYLRQNQGLV NSDPVLHASH LHPHPVVVAN 60
61 VNYNNVDDIL HPHDLDSSIN NTNNPLTHEE LLYNQNVSLR SLKQQQSTNY VNNNNNNQHR 120
121 YYSTGPTLPT NQYDPLNFSN RNFQDLSLKT SQPSVQQPQN EYSLLKDENA PVWKEDTEPC 180
181 LNKSTYLQTH IDEINRCYEQ KNYNKINSLY QSLKRNDIVP PLEIFTKVLD SLCKRPLDNN 240
241 DLDNKMYELL TCYQDMINNR LKPPDEIYNI VLLSLFKGSI LAYQFENPNG SDFYKIAIEL 300
301 FNTTTNDPKQ KSVVKFRNFS KDVLDYNLLA MNIYPGHITL SKAQQVIKSS PAFIKDSFYF 360
361 IACFSYAKLT NDKFAIKELY EDFRLSLSSG SPDQGLFDDQ FEIYSVILSS FIETGEVELA 420
421 TNLLDDLVSK IQSSNGLASN ISLLLSSFLI SMSKVDPSKA YEIWFKFHNL NWIPEFSYEF 480
481 YLVFMANSFQ DWNLTKKIYD YIFPMERNLS PLKKQKLSDY LLHPIGVDSI TTSLLDYSLQ 540
541 LKDNEVIMKI LEESIVKNFS FDIGIYPFVF NYLREIQCGE DYLMRFIESH AEFIKKSNSI 600
601 NKFQFLNMIV DNFQSQSLLN KISHAKFFKN FVEDFNLENC ELVSYNGLIS CINNFIKIPK 660
661 TIKDFPYILE IHAILVTKLF DFDTYPILQN GNNEVLLKFR DQIEHQFKML AQNFCRLNLD 720
721 PNLLAGVVSQ AMKMVNLDDT ANGQDLLNFF NHPGDWDKSY PLSLGSFIRN SPRGGIREFT 780
781 KLSKEGYCFD YDTYKELIIK RAINKQIIDK CLEVCPDSIE LKNIVNLMIS KIPGRNLTQL 840
841 IINNPKFSKV FVPNLRNDSM LKLIENCESL SNFIRICDFP EKFKSIAIQA ENKNAIELIY 900
901 ERLFDGGKYA DILRYNNIVP VLNLELLLKS CIRSGEFKKY ESLSKKFNDK ISESSKIDIQ 960
961 LEYLINKNDL KGAFTLFEKT PRELRTPHKT MDLYTFALFL DSFNRNITYY ESPENTLQFA1020
1021 NILSSQTSFI NLLSTYNLIA HSDHLMNFNV GGMAAKVKKE ILNQMLNNLY DSIRLLSPSI1080
1081 ENDKSMKEKL REKVKNYCRF KAYLKSPELD MDELKTLVSV ESFLNPFTPS MLFNNLIETI1140
1141 YINEHASSLV LQNGLIYSLQ QKGLNKILSY LEESFITSGN DANIEKVREF RSLLRKSKPL1200
1201 QA
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [170-239] |
1 11 21 31 41 51
| | | | | |
1 APVWKEDTEP CLNKSTYLQT HIDEINRCYE QKNYNKINSL YQSLKRNDIV PPLEIFTKVL 60
61 DSLCKRPLDN
|
| Detection Method: | |
| Confidence: | 30.958607 |
| Match: | PF08579.2 |
| Description: | No description for PF08579.2 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [240-332] |
1 11 21 31 41 51
| | | | | |
1 NDLDNKMYEL LTCYQDMINN RLKPPDEIYN IVLLSLFKGS ILAYQFENPN GSDFYKIAIE 60
61 LFNTTTNDPK QKSVVKFRNF SKDVLDYNLL AMN
|
| Detection Method: | |
| Confidence: | 1.06 |
| Match: | 1w3bA |
| Description: | The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [333-854] |
1 11 21 31 41 51
| | | | | |
1 IYPGHITLSK AQQVIKSSPA FIKDSFYFIA CFSYAKLTND KFAIKELYED FRLSLSSGSP 60
61 DQGLFDDQFE IYSVILSSFI ETGEVELATN LLDDLVSKIQ SSNGLASNIS LLLSSFLISM 120
121 SKVDPSKAYE IWFKFHNLNW IPEFSYEFYL VFMANSFQDW NLTKKIYDYI FPMERNLSPL 180
181 KKQKLSDYLL HPIGVDSITT SLLDYSLQLK DNEVIMKILE ESIVKNFSFD IGIYPFVFNY 240
241 LREIQCGEDY LMRFIESHAE FIKKSNSINK FQFLNMIVDN FQSQSLLNKI SHAKFFKNFV 300
301 EDFNLENCEL VSYNGLISCI NNFIKIPKTI KDFPYILEIH AILVTKLFDF DTYPILQNGN 360
361 NEVLLKFRDQ IEHQFKMLAQ NFCRLNLDPN LLAGVVSQAM KMVNLDDTAN GQDLLNFFNH 420
421 PGDWDKSYPL SLGSFIRNSP RGGIREFTKL SKEGYCFDYD TYKELIIKRA INKQIIDKCL 480
481 EVCPDSIELK NIVNLMISKI PGRNLTQLII NNPKFSKVFV PN
|
| Detection Method: | |
| Confidence: | 1.08 |
| Match: | 2gw1A |
| Description: | No description for 2gw1A was found. |
|
Region A: Residues: [855-1084] |
1 11 21 31 41 51
| | | | | |
1 LRNDSMLKLI ENCESLSNFI RICDFPEKFK SIAIQAENKN AIELIYERLF DGGKYADILR 60
61 YNNIVPVLNL ELLLKSCIRS GEFKKYESLS KKFNDKISES SKIDIQLEYL INKNDLKGAF 120
121 TLFEKTPREL RTPHKTMDLY TFALFLDSFN RNITYYESPE NTLQFANILS SQTSFINLLS 180
181 TYNLIAHSDH LMNFNVGGMA AKVKKEILNQ MLNNLYDSIR LLSPSIENDK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [1085-1202] |
1 11 21 31 41 51
| | | | | |
1 SMKEKLREKV KNYCRFKAYL KSPELDMDEL KTLVSVESFL NPFTPSMLFN NLIETIYINE 60
61 HASSLVLQNG LIYSLQQKGL NKILSYLEES FITSGNDANI EKVREFRSLL RKSKPLQA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
