YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP18
Organism:	Saccharomyces cerevisiae
Length:	59 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP18.

Description	E-value	Query Range	Subject Range
ATP18_SCHPO - ATP synthase subunit J, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=atp1... atp18 - F0 ATPase subunit J	93.0	[0..2]	[53..6]
gi\|45190767, gi\|... - gi\|45190767\|ref\|NP_985021.1\| AER163Wp [Ashbya gossypii ATCC 10895], gi\|44983809\|gb\|AAS52845.1\| AER16... gi\|44983809 - gi\|44983809\|gb\|AAS52845.1\| AER163Wp [Ashbya gossypii ATCC 10895]	86.0	[0..1]	[58..1]
gi\|49640860\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140] gi\|50303573, gi\|... - gi\|50303573\|ref\|XP_451728.1\| unnamed protein product [Kluyveromyces lactis], gi\|49640860\|emb\|CAH0212...	83.0	[0..1]	[58..1]
gi\|49652953 - gi\|49652953\|emb\|CAG85289.1\| DEHA2B07568p [Debaryomyces hansenii] gi\|49652953, gi\|... - gi\|50413597\|ref\|XP_457288.1\| hypothetical protein DEHA0B07601g [Debaryomyces hansenii CBS767], gi\|49...	70.0	[0..1]	[59..1]
gi\|46135829, gi\|... - gi\|46135829\|ref\|XP_389606.1\| hypothetical protein FG09430.1 [Gibberella zeae PH-1], gi\|42554579\|gb\|E...	63.0	[0..2]	[53..9]
gi\|49078674, gi\|... - gi\|71022737\|ref\|XP_761598.1\| hypothetical protein UM05451.1 [Ustilago maydis 521], ref\|XP_403066.1\| ...	59.0	[0..2]	[47..6]
gi\|169595174, gi... - gi\|169595174\|ref\|XP_001791011.1\| hypothetical protein SNOG_00321 [Phaeosphaeria nodorum SN15], gi\|11...	58.0	[0..3]	[47..7]
gi\|149209685, gi... - gi\|86196280\|gb\|EAQ70918.1\| hypothetical protein MGCH7_ch7g325 [Magnaporthe grisea 70-15], gi\|3997027...	56.0	[0..2]	[46..15]
gi\|32416642, gi\|... - gi\|32416642\|ref\|XP_328799.1\| predicted protein [Neurospora crassa], gi\|28927029\|gb\|EAA35988.1\| predi... gi\|85068464 - gi\|85068464\|ref\|XP_965224.1\| hypothetical protein NCU08093 [Neurospora crassa OR74A]	53.0	[0..2]	[46..9]
gi\|240105097 - gi\|240105097\|gb\|EER23290.1\| ATP synthase j chain family protein [Coccidioides posadasii C735 delta S... gi\|119194935, gi... - gi\|90306857\|gb\|EAS36488.1\| hypothetical protein CIMG_01842 [Coccidioides immitis RS], gi\|119194935\|r...	53.0	[0..3]	[47..6]

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Predicted Domain #1

Region A:
Residues: [1-59]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKRFPTPIL KVYWPFFVAG AAVYYGMSKA ADLSSNTKEF INDPRNPRFA KGGKFVEVD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	47.920819
Match:	PF04911.3
Description:	No description for PF04911.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.541	N/A	N/A	a.144.1	PABC (PABP) domain
View	Download	0.530	N/A	N/A	a.5.1	DNA helicase RuvA subunit, C-terminal domain
View	Download	0.488	N/A	N/A	a.64.2	Bacteriocin AS-48
View	Download	0.374	N/A	N/A	a.5.2	UBA-like
View	Download	0.353	N/A	N/A	a.5.1	DNA helicase RuvA subunit, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits