YRC Public Data Repository - Protein Structure Prediction

Protein:	BET5
Organism:	Saccharomyces cerevisiae
Length:	159 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BET5.

Description	E-value	Query Range	Subject Range
BET5 - Component of the TRAPP (transport protein particle) complex, which plays an essential role in the ve... gi\|151946087 - gi\|151946087\|gb\|EDN64318.1\| TRAPP 18kDa component [Saccharomyces cerevisiae YJM789] gi\|190408167 - gi\|190408167\|gb\|EDV11432.1\| TRAPP 18kDa component [Saccharomyces cerevisiae RM11-1a] BET5_YEAST - Trafficking protein particle complex subunit BET5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / ...	9.0E-57	[1..159]	[1..159]
tr\|G1TDG9\|G1TDG9... - pep:novel chromosome:oryCun2:19:11275596:11276772:1 gene:ENSOCUG00000017332 transcript:ENSOCUT000000... gi\|73955584, gi\|... - gi\|73955590\|ref\|XP_859798.1\| PREDICTED: similar to trafficking protein particle complex 1 isoform 5 ... gi\|109113165, gi... - gi\|109113165\|ref\|XP_001111325.1\| PREDICTED: similar to trafficking protein particle complex 1 isofor... TPPC1_BOVIN - Trafficking protein particle complex subunit 1 OS=Bos taurus GN=TRAPPC1 PE=2 SV=1 ENSCJAT00000028718 - null gi\|149724275 - gi\|149724275\|ref\|XP_001504850.1\| PREDICTED: similar to trafficking protein particle complex 1 [Equus... tr\|M3WYU8\|M3WYU8... - Trafficking protein particle complex 1 OS=Felis catus GN=TRAPPC1 PE=4 SV=1 TRAPPC1, TPCN1 - trafficking protein particle complex 1, two pore segment channel 1 gi\|114666264 - gi\|114666264\|ref\|XP_001172364.1\| PREDICTED: trafficking protein particle complex 1 [Pan troglodytes] CCDS11125.1_1 - null gi\|123979914 - gi\|123979914\|gb\|ABM81786.1\| trafficking protein particle complex 1 [synthetic construct]	1.0E-40	[1..147]	[1..141]
gi\|11282327, gi\|... - gi\|7406424\|emb\|CAB85533.1\| putative protein [Arabidopsis thaliana], gi\|28827482\|gb\|AAO50585.1\| unkno...	5.0E-39	[2..128]	[3..119]
bet5 - TRAPP complex subunit Bet5 BET5_SCHPO - Transport protein particle subunit bet5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=be...	7.0E-35	[1..152]	[1..155]
gi\|194905627, gi... - gi\|194905627\|ref\|XP_001981228.1\| GG11737 [Drosophila erecta], gi\|190655866\|gb\|EDV53098.1\| GG11737 [D... gi\|195505102, gi... - gi\|195505102\|ref\|XP_002099364.1\| GE10864 [Drosophila yakuba], gi\|194185465\|gb\|EDW99076.1\| GE10864 [D... Bet5-PA - This gene is referred to in FlyBase by the symbol Dmel\Bet5 (CG1359, FBgn0260860). It is a protein_c...	1.0E-34	[1..120]	[1..114]
TPPC4_MOUSE - Trafficking protein particle complex subunit 4 OS=Mus musculus GN=Trappc4 PE=1 SV=1	3.0E-34	[34..128]	[101..194]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	4.0E-33	[1..128]	[1..143]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIYSFWIFD RHCNCIFDRE WTLASNSASG TINSKQNEED AKLLYGMIFS LRSITQKLSK  60
   61 GSVKNDIRSI STGKYRVHTY CTASGLWFVL LSDFKQQSYT QVLQYIYSHI YVKYVSNNLL 120
  121 SPYDFAENEN EMRGQGTRKI TNRNFISVLE SFLAPMVNQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits