| Protein: | COG8 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 607 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for COG8.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..607] | [1..607] |
|
|
7.0E-48 | [1..550] | [63..623] |
|
|
5.0E-40 | [19..518] | [123..661] |
|
Region A: Residues: [1-306] |
1 11 21 31 41 51
| | | | | |
1 MELILNSLIS DDLTEEQKRL SLDFLQDILQ SNTKDYESYF SSRAVPGSIT EDIAEIDAEL 60
61 SALDRKIRKT LLDNTSQIIG NILENDDRAQ LDDIAKSLEQ LWELDTNINK AADRNVTNDD 120
121 INNESVSIDD FLEDDKEDND TGRIMTTESN NLARKKKEDE FHKALSRLRN RISTKEDDKD 180
181 DIRSDTLVTV LENLDSITDL MELPFLARTC IRTGHYQEAV MLYTHTTSLR SRFPGSTIVD 240
241 EVCEKVLNEI STTMLSGLVK LLSTNVSVNS LKKILQYLNS IPPFDGKTNK SLLSVFLAMR 300
301 YKFITD
|
| Detection Method: |  |
| Confidence: | 2.30103 |
| Match: | 1i84S_ |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [307-607] |
1 11 21 31 41 51
| | | | | |
1 EIASYPLDVE SSNESLIEMM VKRKIEVLRE HVYMSLNVFL KSFLYDTNDL EIPFPEELES 60
61 TVLRINGTNE EKEIEEKEKE TKKEEYQKQD SVANNEEDVT ENKSIEDVQE EVQGKVEGED 120
121 DGAERKTENE IENETVNKTE DKAEKEKEEE VNTKDNKAEK EEEEINKVEV TPEEPSKSID 180
181 NKAEKEEEEI NKVEVTPEEP SKKIRTSKRE NKIPTNAVML QFVDKCITYV LKDLTRGLNS 240
241 IKLSDSVCLQ LVYCSFRLCD LNRNYHHLFL KKINDTSLFT TEQLARAIDK RAELASKYIY 300
301 S
|
| Detection Method: | |
| Confidence: | 12.26 |
| Match: | 1k83A |
| Description: | RBP1 |
Matching Structure (courtesy of the PDB): |
|
