YRC Public Data Repository - Protein Structure Prediction

Protein:	RPS1B
Organism:	Saccharomyces cerevisiae
Length:	255 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPS1B.

Description	E-value	Query Range	Subject Range
ENSCJAT000000295... - null, null, null, null gi\|149698161 - gi\|149698161\|ref\|XP_001501524.1\| PREDICTED: similar to ribosomal protein S3a [Equus caballus] gi\|90076792, gi\|... - gi\|90076792\|dbj\|BAE88076.1\| unnamed protein product [Macaca fascicularis], gi\|90075356\|dbj\|BAE87358.... tr\|A0A0A0MQ24\|A0... - 40S ribosomal protein S3a OS=Felis catus GN=RPS3A PE=3 SV=1 gi\|114596379, gi... - gi\|114596381\|ref\|XP_001153182.1\| PREDICTED: similar to v-fos transformation effector protein isoform... gi\|125991725 - gi\|125991725\|emb\|CAF32214.1\| Ribosomal protein S3Ae [Sus scrofa] RS3A_BOVIN - 40S ribosomal protein S3a OS=Bos taurus GN=RPS3A PE=2 SV=3 gi\|123995293, gi... - gi\|208967332\|dbj\|BAG73680.1\| ribosomal protein S3A [synthetic construct], gi\|123995293\|gb\|ABM85248.1... RPS3A - ribosomal protein S3A gi\|73977919, gi\|... - gi\|73977921\|ref\|XP_867656.1\| PREDICTED: similar to ribosomal protein S3a isoform 13 [Canis familiari... ENSOCUP000000060... - pep:novel chromosome:oryCun2:X:88529355:88530149:1 gene:ENSOCUG00000023695 transcript:ENSOCUT0000002...	0.0	[1..255]	[1..264]
gi\|12833651, gi\|... - gi\|31980669\|ref\|NP_058655.2\| ribosomal protein S3A [Mus musculus], gi\|12833651\|dbj\|BAB22611.1\| unnam...	0.0	[1..255]	[1..264]
RS3A_RAT - 40S ribosomal protein S3a OS=Rattus norvegicus GN=Rps3a PE=1 SV=2 tr\|G3HKG8\|G3HKG8... - 40S ribosomal protein S3a OS=Cricetulus griseus GN=Rps3a PE=3 SV=1	0.0	[1..255]	[1..264]
gi\|7507776 - gi\|7507776\|pir\|\|T16867 probable cytochrome P450 T13C5.1 [similarity] - Caenorhabditis elegans	0.0	[1..255]	[1..264]
RS3A_OPHHA - 40S ribosomal protein S3a OS=Ophiophagus hannah GN=RPS3A PE=2 SV=3	0.0	[1..255]	[1..264]
RS3A_EIMTE - 40S ribosomal protein S3a OS=Eimeria tenella PE=2 SV=3	0.0	[1..255]	[1..264]
gi\|15294017 - gi\|15294017\|gb\|AAK95185.1\| 40S ribosomal protein S3a [Ictalurus punctatus]	0.0	[6..255]	[4..264]

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Predicted Domain #1

Region A:
Residues: [1-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVGKNKRLS RGKKGLKKKV VDPFTRKEWF DIKAPSTFEN RNVGKTLVNK STGLKNASDA  60
   61 LKGRVVEVCL ADLQGSEDHS FRKVKLRVDE VQGKNLLTNF HGMDFTTDKL RSMVRKWQTL 120
  121 IEANVTVKTS DDYVLRIFAI AFTRKQANQV KRHSYAQSSH IRAIRKVISE ILTREVQNST 180
  181 LAQLTSKLIP EVINKEIENA TKDIFPLQNI HVRKVKLLKQ PKFDVGALMA LHGEGSGEEK 240
  241 GKKVSGFKDE VLETV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	145.431798
Match:	PF01015
Description:	Ribosomal S3Ae family

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits