YRC Public Data Repository - Protein Structure Prediction

Protein:	SML1
Organism:	Saccharomyces cerevisiae
Length:	104 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SML1.

Description	E-value	Query Range	Subject Range
gi\|49528565 - gi\|49528565\|emb\|CAG62226.1\| unnamed protein product [Candida glabrata] gi\|50293681, gi\|... - gi\|50293681\|ref\|XP_449252.1\| unnamed protein product [Candida glabrata], gi\|49528565\|emb\|CAG62226.1\|...	84.0	[0..30]	[104..27]
DIF1_ASHGO - Damage-regulated import facilitator 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923... gi\|45190727, gi\|... - gi\|45190727\|ref\|NP_984981.1\| AER122Cp [Ashbya gossypii ATCC 10895], gi\|44983706\|gb\|AAS52805.1\| AER12...	54.0	[0..27]	[96..119]
DIF1_KLULA - Damage-regulated import facilitator 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 707... gi\|49640909 - gi\|49640909\|emb\|CAH02170.1\| KLLA0B05423p [Kluyveromyces lactis]	49.0	[0..27]	[104..88]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNSQDYFYA QNRCQQQQAP STLRTVTMAE FRRVPLPPMA EVPMLSTQNS MGSSASASAS  60
   61 SLEMWEKDLE ERLNSIDHDM NNNKFGSGEL KSMFNQGKVE EMDF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits