| Protein: | USA1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 838 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for USA1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..838] | [1..838] |
|
Region A: Residues: [1-838] |
1 11 21 31 41 51
| | | | | |
1 MSEYLAQTPC KFTIWSSEID LIRTNLLVNA HPLSTVGRLL QYIHYQIYKQ LRAIYQPEEQ 60
61 CTNSEIPHTP LNSINTYFLS YEGRELSATC LLKDITSSSH PDSNHFIRLQ LEKRTSPSGS 120
121 AFDLEYDMEG EFNSMNIQFE INTLSSQRIF NSMEPNLPIG TTLARLEKLA LERIKDFEKS 180
181 AGNLCGIKED HSVSDLQGFI IKGKQTPMFL NYGSDSDYYK DLNLVDLIGI DFAPAHNSFF 240
241 TFLFKMNHEQ NSHIANDEER FVLEFISDAT LSITQMNVKP DTTVKQVKDF ICSVYTHSLN 300
301 LRRNDIKLIY KGQLLHENNF AGNSSKISEY IKEPHEVKVH VQINQEYTES GPGFWNEVFN 360
361 NPNIFQFMPP DTRSQSPVSF APTQGRSPAA IRGEERGIPY VTESGNDIVP TDELYRKCII 420
421 NGDEVVFIPV SELNPQSSYL SVIKGDYGEI KIPISSNDYR INGDNILLSP SAIEQLESAL 480
481 NFKIERPRDS TLLHPSGEHV RAADNTSSAN DNNTVENDES AWNRRVVRPL RNSFPLLLVL 540
541 IRTFYLIGYN SLVPFFIILE FGSFLPWKYI ILLSLLFIFR TVWNTQEVWN LWRDYLHLNE 600
601 IDEVKFSQIK EFINSNSLTL NFYKKCKDTQ SAIDLLMIPN LHEQRLSVYS KYDIEYDTNT 660
661 PDVGQLNLLF IKVLSGEIPK DALDELFKEF FELYETTRNM NTLYPQDSLN ELLLMIWKES 720
721 QKKDINTLPK YRRWFQTLCS QIAEHNVLDV VLRYIIPDPV NDRVITAVIK NFVLFWVTLL 780
781 PYVKEKLDDI VAQRARDREQ PAPSAQQQEN EDEALIIPDE EEPTATGAQP HLYIPDED
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [215-369] |
1 11 21 31 41 51
| | | | | |
1 DSDYYKDLNL VDLIGIDFAP AHNSFFTFLF KMNHEQNSHI ANDEERFVLE FISDATLSIT 60
61 QMNVKPDTTV KQVKDFICSV YTHSLNLRRN DIKLIYKGQL LHENNFAGNS SKISEYIKEP 120
121 HEVKVHVQIN QEYTESGPGF WNEVFNNPNI FQFMP
|
| Detection Method: | |
| Confidence: | 1.06 |
| Match: | 1se9A |
| Description: | Structure of At3g01050, a ubiquitin-fold protein from Arabidopsis thaliana |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [370-518] |
1 11 21 31 41 51
| | | | | |
1 PDTRSQSPVS FAPTQGRSPA AIRGEERGIP YVTESGNDIV PTDELYRKCI INGDEVVFIP 60
61 VSELNPQSSY LSVIKGDYGE IKIPISSNDY RINGDNILLS PSAIEQLESA LNFKIERPRD 120
121 STLLHPSGEH VRAADNTSSA NDNNTVEND
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.496 | b.29.1 | Concanavalin A-like lectins/glucanases |
| View | Download | 0.374 | d.24.1 | Pili subunits |
| View | Download | 0.358 | a.1.1 | Globin-like |
| View | Download | 0.314 | a.4.3 | ARID-like |
| View | Download | 0.289 | a.1.1 | Globin-like |
|
Region A: Residues: [519-721] |
1 11 21 31 41 51
| | | | | |
1 ESAWNRRVVR PLRNSFPLLL VLIRTFYLIG YNSLVPFFII LEFGSFLPWK YIILLSLLFI 60
61 FRTVWNTQEV WNLWRDYLHL NEIDEVKFSQ IKEFINSNSL TLNFYKKCKD TQSAIDLLMI 120
121 PNLHEQRLSV YSKYDIEYDT NTPDVGQLNL LFIKVLSGEI PKDALDELFK EFFELYETTR 180
181 NMNTLYPQDS LNELLLMIWK ESQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [722-838] |
1 11 21 31 41 51
| | | | | |
1 KKDINTLPKY RRWFQTLCSQ IAEHNVLDVV LRYIIPDPVN DRVITAVIKN FVLFWVTLLP 60
61 YVKEKLDDIV AQRARDREQP APSAQQQENE DEALIIPDEE EPTATGAQPH LYIPDED
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.407 | d.58.26 | GHMP Kinase, C-terminal domain |
| View | Download | 0.315 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.311 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.293 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.254 | a.100.1 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
