YRC Public Data Repository - Protein Structure Prediction

Protein:	YML018C
Organism:	Saccharomyces cerevisiae
Length:	393 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YML018C.

Description	E-value	Query Range	Subject Range
YMB8_YEAST - Uncharacterized vacuolar membrane protein YML018C OS=Saccharomyces cerevisiae (strain ATCC 204508 / ... YML018C - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th...	7.0E-50	[1..393]	[1..393]
WTR13_ARATH - WAT1-related protein At2g37460 OS=Arabidopsis thaliana GN=At2g37460 PE=2 SV=1	9.0E-44	[45..385]	[14..344]
gi\|2598575 - gi\|2598575\|emb\|CAA75575.1\| MtN21 [Medicago truncatula]	2.0E-40	[44..390]	[16..352]
gi\|14090211, gi\|... - gi\|34895316\|ref\|NP_909001.1\| putative nodulin-like protein 5NG4 [Oryza sativa (japonica cultivar-gro...	3.0E-38	[65..376]	[17..334]
gi\|12718295 - gi\|12718295\|emb\|CAC28857.1\| conserved hypothetical protein [Neurospora crassa]	3.0E-38	[12..388]	[10..390]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSKDQTSFN KRWTLGLLML GLVIILWVLS SFLINLIFED DSYRKPFFIT YTNTAAFIFY  60
   61 LFPTAKAVVV NYKDTGRANV HRELIME

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [88-393]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEGTGSDSNR SVDMTSPLLT NLEAGTHANQ KKRLTLYETI KLSAEFCILW FTANLVTNAS  60
   61 LAFTSVASQT ILSTTSSFFT LFIGAICHVE SLSKSKVLGS FISFVGIIMV TKSDSHQRYQ 120
  121 RHIADVSGDD NDAVQVLIGN LLALAGAVLY GVYSTLLKRE VGDETRVNMK IFFGFVGLFN 180
  181 LLFLWPSLIV LDFFGWEPFS LPKDPKVVVI IFVNCLITFV SDFCWAKAML LTSPLTVTVG 240
  241 LSITIPLAMF GDVIFKHKTM SALYLFGATL ILGSFFIINK SSEEEHFENS ITASNYESVE 300
  301 VPAANN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits