| Protein: | YAP1 |
| Organism: | Saccharomyces cerevisiae |
| Length: | 650 amino acids |
| Reference: | Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAP1.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..650] | [1..650] |
|
|
0.0 | [1..649] | [1..582] |
|
|
1.0E-93 | [56..647] | [32..495] |
|
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1.0E-75 | [391..650] | [284..554] |
|
|
3.0E-75 | [391..650] | [284..546] |
|
Region A: Residues: [1-187] |
1 11 21 31 41 51
| | | | | |
1 MSVSTAKRSL DVVSPGSLAE FEGSKSRHDE IENEHRRTGT RDGEDSEQPK KKGSKTSKKQ 60
61 DLDPETKQKR TAQNRAAQRA FRERKERKMK ELEKKVQSLE SIQQQNEVEA TFLRDQLITL 120
121 VNELKKYRPE TRNDSKVLEY LARRDPNLHF SKNNVNHSNS EPIDTPNDDI QENVKQKMNF 180
181 TFQYPLD
|
| Detection Method: |  |
| Confidence: | 62.67837 |
| Match: | 1gd2E_ |
| Description: | PAP1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [188-325] |
1 11 21 31 41 51
| | | | | |
1 NDNDNDNSKN VGKQLPSPND PSHSAPMPIN QTQKKLSDAT DSSSATLDSL SNSNDVLNNT 60
61 PNSSTSMDWL DNVIYTNRFV SGDDGSNSKT KNLDSNMFSN DFNFENQFDE QVSEFCSKMN 120
121 QVCGTRQCPI PKKPISAL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.442 | 0.913 | response to oxidative stress | c.47.1 | Thioredoxin-like |
| View | Download | 0.538 | 0.913 | response to oxidative stress | a.118.8 | TPR-like |
| View | Download | 0.431 | 0.913 | response to oxidative stress | a.74.1 | Cyclin-like |
| View | Download | 0.472 | 0.913 | response to oxidative stress | d.146.1 | Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |
| View | Download | 0.411 | 0.913 | response to oxidative stress | a.78.1 | Fatty acid responsive transcription factor FadR, C-terminal domain |
| View | Download | 0.394 | 0.913 | response to oxidative stress | a.74.1 | Cyclin-like |
| View | Download | 0.394 | 0.913 | response to oxidative stress | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.385 | 0.913 | response to oxidative stress | a.27.1 | Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases |
| View | Download | 0.378 | 0.913 | response to oxidative stress | a.118.9 | ENTH/VHS domain |
| View | Download | 0.363 | 0.913 | response to oxidative stress | a.7.1 | Spectrin repeat |
| View | Download | 0.247 | 0.913 | response to oxidative stress | a.26.1 | 4-helical cytokines |
| View | Download | 0.241 | 0.913 | response to oxidative stress | a.131.1 | Peridinin-chlorophyll protein |
| View | Download | 0.212 | 0.913 | response to oxidative stress | a.1.1 | Globin-like |
| View | Download | 0.204 | 0.913 | response to oxidative stress | a.23.1 | HSC20 (HSCB), C-terminal oligomerisation domain |
| View | Download | 0.203 | 0.913 | response to oxidative stress | d.167.1 | Peptide deformylase |
| View | Download | 0.202 | 0.913 | response to oxidative stress | c.50.1 | Macro domain-like |
|
Region A: Residues: [326-650] |
1 11 21 31 41 51
| | | | | |
1 DKEVFASSSI LSSNSPALTN TWESHSNITD NTPANVIATD ATKYENSFSG FGRLGFDMSA 60
61 NHYVVNDNST GSTDSTGSTG NKNKKNNNNS DDVLPFISES PFDMNQVTNF FSPGSTGIGN 120
121 NAASNTNPSL LQSSKEDIPF INANLAFPDD NSTNIQLQPF SESQSQNKFD YDMFFRDSSK 180
181 EGNNLFGEFL EDDDDDKKAA NMSDDESSLI KNQLINEEPE LPKQYLQSVP GNESEISQKN 240
241 GSSLQNADKI NNGNDNDNDN DVVPSKEGSL LRCSEIWDRI TTHPKYSDID VDGLCSELMA 300
301 KAKCSERGVV INAEDVQLAL NKHMN
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.538 | N/A | N/A | a.118.8 | TPR-like |
| View | Download | 0.472 | N/A | N/A | d.146.1 | Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain |
| View | Download | 0.442 | N/A | N/A | c.47.1 | Thioredoxin-like |
| View | Download | 0.441 | N/A | N/A | a.118.9 | ENTH/VHS domain |
| View | Download | 0.431 | N/A | N/A | a.74.1 | Cyclin-like |
|
Region A: Residues: [350-518] |
1 11 21 31 41 51
| | | | | |
1 HSNITDNTPA NVIATDATKY ENSFSGFGRL GFDMSANHYV VNDNSTGSTD STGSTGNKNK 60
61 KNNNNSDDVL PFISESPFDM NQVTNFFSPG STGIGNNAAS NTNPSLLQSS KEDIPFINAN 120
121 LAFPDDNSTN IQLQPFSESQ SQNKFDYDMF FRDSSKEGNN LFGEFLEDD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [519-650] |
1 11 21 31 41 51
| | | | | |
1 DDDKKAANMS DDESSLIKNQ LINEEPELPK QYLQSVPGNE SEISQKNGSS LQNADKINNG 60
61 NDNDNDNDVV PSKEGSLLRC SEIWDRITTH PKYSDIDVDG LCSELMAKAK CSERGVVINA 120
121 EDVQLALNKH MN
|
| Detection Method: | |
| Confidence: | 33.30103 |
| Match: | 1sseB |
| Description: | Solution structure of the oxidized form of the Yap1 redox domain |
Matching Structure (courtesy of the PDB): |
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